Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10429
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   3.7  
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    24   8.5  

>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -2

Query: 233 YIHFVHYSDLVFAVSILSKLC 171
           ++ ++HY+  + AV+I+ K+C
Sbjct: 110 WLDYIHYAQKIKAVNIVGKIC 130


>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 248 CGPGWAMLAYNQLRYNILRLIVLNGKCNKLY 340
           CG G+AM+      Y  + L  +N +CN  Y
Sbjct: 26  CGKGYAMIQIFDSIYQDIPLKKVNFECNNEY 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,682,288
Number of Sequences: 5004
Number of extensions: 30155
Number of successful extensions: 57
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)