Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10429
         (423 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49)                  29   2.1  
SB_28669| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.59)             29   2.1  
SB_17377| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  

>SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49)
          Length = 358

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 309 LYLMGNVTSFIFVCIVHMFPK 371
           +YL   VT+F+F+C++  FPK
Sbjct: 80  MYLEFGVTTFVFLCVLIYFPK 100


>SB_28669| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.59)
          Length = 543

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 252 PHRKALIHTLCSLFRSGVCCFHII*T 175
           P+ K + H +C LF+  VC F ++ T
Sbjct: 276 PYEKEMAHKVCELFKQTVCGFDLLRT 301


>SB_17377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 108 LGGALVTVRVAARPCHVNHSLTQFR*YGNSKHQI 209
           LGG ++   V   PC V+H + QF  +    H++
Sbjct: 303 LGGGVILCHVFPIPCRVSHKIKQFYPWRGVSHEM 336


>SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 852

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 72  TCM*TVVCVLRTLGGALVTVRVAARPCHVN 161
           TC  + +C+L  +  A+V V   A  CHVN
Sbjct: 472 TCF-SFLCILVVVAAAIVVVVTVAAVCHVN 500


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,108,717
Number of Sequences: 59808
Number of extensions: 256015
Number of successful extensions: 469
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)