Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10429
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   4.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   4.3  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   7.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    20   10.0 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   10.0 

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +2

Query: 188  WKQQTPDLNNEQSVCINAFLCGPGWAMLAYNQ 283
            W+ + P  N +  VCI + +      +L+Y++
Sbjct: 1228 WRVEMPRSNADYEVCIGSQIMVSPETLLSYDE 1259


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 114 GALVTVRVAARPCHVNHS 167
           GALVT+ V    C VN S
Sbjct: 181 GALVTLSVQLLSCEVNGS 198


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 299 VCYISTDCKRASPSP 255
           VC + TD  ++ PSP
Sbjct: 607 VCVLKTDTNQSCPSP 621


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -2

Query: 266 SPSPVRIGRH*YIHFVHYSDLVFAVSILSKLC 171
           +PS      H  +  + ++D+ F V+  SK+C
Sbjct: 26  APSKNTTITHNILRGMQFTDITFGVNKWSKVC 57


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 354 QCTQI*SLLHFPLSTIRRSML 292
           QC Q  SLL    ST+ RS++
Sbjct: 691 QCPQTASLLSSTHSTLARSLM 711



 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 118 APPSVRSTHTTVHIHVNLHEP 56
           A P+V   HT   +H++L  P
Sbjct: 658 AEPAVIVQHTQSQLHLHLTSP 678


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 294 TYYA*LYLMGNVTSFIFVCIVHMFPK*CLFKTE*TLCQ 407
           T ++ L+ +G   S I  CI  +F K   F  +  +C+
Sbjct: 42  TVFSVLFWLGYCNSAINPCIYALFSKDFRFAFKSIICK 79


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 294 TYYA*LYLMGNVTSFIFVCIVHMFPK*CLFKTE*TLCQ 407
           T ++ L+ +G   S I  CI  +F K   F  +  +C+
Sbjct: 490 TVFSVLFWLGYCNSAINPCIYALFSKDFRFAFKSIICK 527


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,839
Number of Sequences: 438
Number of extensions: 2241
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)