Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10423
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.4  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    28   1.9  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   7.6  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 118 IRCISPSLSHACDVTRPYRACECKFL*GRDRERASTARISPSLSHVV 258
           +RC + SL H C +   YRAC   F   +  +R      SP    VV
Sbjct: 720 LRCFA-SLLHNCCIFYAYRACSSLFGENKSHKRIEKTNTSPQEPGVV 765


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 486 HRIVRAELWTVDSTCTGPDIHNIQSGFRL 400
           HR+V+   + +D  CTGP    IQ   RL
Sbjct: 149 HRLVQYFAFCIDHFCTGPSDSRIQEKIRL 177


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 359 VTSRTCERDAEMRALSLSLSKKFTFRCSVGSCD 261
           +T RTCE   E +    +L K  TFR + G  D
Sbjct: 880 ITKRTCEHLLEHKQFESTLKKVATFRNAEGIND 912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,402,656
Number of Sequences: 5004
Number of extensions: 70253
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)