Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10423
         (837 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical ...    29   5.4  
Z83228-2|CAB05733.1|  370|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical ...    28   9.5  
AL021492-12|CAJ76949.1|  622|Caenorhabditis elegans Hypothetical...    28   9.5  
AL021492-11|CAA16378.1|  684|Caenorhabditis elegans Hypothetical...    28   9.5  

>AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.2 protein.
          Length = 254

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 704 LFNTFSILISIDFCT*TLSAGSGTPPERGSGLVASSGCRGGPSP 835
           +F  F +LI++  C  T   G G  P  G+     SG  G P P
Sbjct: 194 IFGPFGLLIALAVCFFTQPRGGGPAP--GAPRAGGSGAGGAPRP 235


>Z83228-2|CAB05733.1|  370|Caenorhabditis elegans Hypothetical
           protein F52F12.2 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 831 EGPPRQPEEATKPDPRSGGVPEPADS 754
           E P R+ E+   P+P S  VPE  DS
Sbjct: 330 ETPTRREEQQVPPNPSSSEVPETGDS 355


>AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical
           protein Y51H4A.7 protein.
          Length = 670

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 388 IYIQMLGRVL*RHERAREMPRCVLSLSLSQRNLHS 284
           I I  LG V+   ER  E P C++ L   Q +LH+
Sbjct: 309 ISIGYLGNVVDLWERLAEEPECLVELGSDQTSLHN 343


>AL021492-12|CAJ76949.1|  622|Caenorhabditis elegans Hypothetical
           protein Y45F10D.3b protein.
          Length = 622

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 258 HDVRKRWRNACSACSLSVSPSKKFTFAC 175
           HD+R + R  C  CS SV  +    F C
Sbjct: 522 HDIRPKGRKICFDCSTSVDKAPVILFDC 549


>AL021492-11|CAA16378.1|  684|Caenorhabditis elegans Hypothetical
           protein Y45F10D.3a protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 258 HDVRKRWRNACSACSLSVSPSKKFTFAC 175
           HD+R + R  C  CS SV  +    F C
Sbjct: 584 HDIRPKGRKICFDCSTSVDKAPVILFDC 611


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,180,574
Number of Sequences: 27780
Number of extensions: 417247
Number of successful extensions: 1222
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)