Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10423
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   4.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.1  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
 Frame = +2

Query: 311 EREHASRHLSRTFVTSQDPTEHLNVNFXDFNRNPLCMLCI-----SGPVHVESTVHSSAR 475
           E+ +   + S++F   ++ + H  ++  +  R   C +C      SG +H    +H+  R
Sbjct: 117 EKPYQCEYCSKSFSVKENLSVHRRIHTKE--RPYKCDVCERAFEHSGKLHRHMRIHTGER 174

Query: 476 TIRCSCQTSTINMSHGEVI 532
             +C+  + T   S G+++
Sbjct: 175 PHKCTVCSKTFIQS-GQLV 192


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 816  QPEEATKPDPRSGG 775
            Q +EA KP P +GG
Sbjct: 1017 QSQEANKPKPATGG 1030


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,659
Number of Sequences: 438
Number of extensions: 6030
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)