Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10422
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)              163   2e-40
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.49 
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_42201| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)               30   2.0  
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               29   4.5  
SB_55436| Best HMM Match : ig (HMM E-Value=1.2e-24)                    29   4.5  
SB_35065| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_27| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   6.0  
SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)                   28   7.9  
SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
          Length = 260

 Score =  163 bits (395), Expect = 2e-40
 Identities = 74/96 (77%), Positives = 85/96 (88%)
 Frame = +2

Query: 254 AFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 433
           +FGIRRNEKI+VHCTVRG KAEEILE+GLKV+EYEL +  FSATGNFGFGIQEHIDLGIK
Sbjct: 51  SFGIRRNEKISVHCTVRGPKAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIK 110

Query: 434 YDPSIGIYGLDFYVVLGRPGFNVAHEGVRQEKWDFP 541
           YDPSIGIYG+DF+VVLGRPGFN++    +Q +  FP
Sbjct: 111 YDPSIGIYGMDFFVVLGRPGFNISKRKHKQGRVGFP 146



 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 44/49 (89%), Positives = 45/49 (91%)
 Frame = +3

Query: 108 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 254
           N M+ L IRKL LNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR
Sbjct: 2   NPMKELRIRKLVLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 50



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = +1

Query: 493 FQRSTRRRKTGKVGFPHRLTKEDAMKWFQQK 585
           F  S R+ K G+VGFPHRLTK+DAMKWFQQK
Sbjct: 131 FNISKRKHKQGRVGFPHRLTKDDAMKWFQQK 161


>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 198 TPWRHESACHRIHQHRCSSKAF*YEDSALHF*NYPSEPSSPFYLSST 58
           T  R +S   R  + RCS+K+  +   A HF N+   P  PFY S T
Sbjct: 565 TSRRFQSRPQRCPRRRCSNKSLSFVGRA-HFSNFRVTPKMPFYRSMT 610


>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 169 VTG*LVPPRCWSNSQDNSLYFP 234
           VT  LVPP  W+ SQD  +Y+P
Sbjct: 742 VTPPLVPPMPWTGSQDAGMYYP 763


>SB_42201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -1

Query: 545 RWGNPTFPXXXXXXXX*NLAGQVRRKSPVHKFQLRDRT 432
           RWG  TFP            G  RR+ P+   +LR RT
Sbjct: 18  RWGTRTFPRMVPILAIKLFLGLCRRRDPISGCRLRSRT 55


>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
          Length = 379

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = -3

Query: 402 PKPKLPVAEKL-SRRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPK 256
           P P++P +  L S + S S  +KP+SRI ++L+  ++Q   ++  + +P+
Sbjct: 149 PLPRIPTSPSLVSLQVSPSYPYKPVSRIPTSLSLVSLQAPPLYPYKPLPR 198


>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 403

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -3

Query: 402 PKPKLPVAEKLSRRNSYSL-TFKPLSRISSALAPRTVQWTAIFSLRRIPK 256
           P P++P +  L    +  L T+KPL RIS++L+  ++Q +  +  + +P+
Sbjct: 303 PLPRIPTSLSLVSLQAPPLYTYKPLPRISTSLSLVSLQASPSYPYKPLPR 352


>SB_55436| Best HMM Match : ig (HMM E-Value=1.2e-24)
          Length = 703

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -2

Query: 562 HLP---L*GGGEIPLFLSYAFVCYVETW 488
           HLP   L GGG +P   S +F CY++ W
Sbjct: 365 HLPFNFLSGGGTVPEGSSLSFYCYLDRW 392


>SB_35065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 545 RWGNPTFPXXXXXXXX*NLAGQVRRKSPVHKFQLRDRT 432
           RW   TFP            G  RR+ P+ + +LR RT
Sbjct: 48  RWETRTFPRMIPILAIKLFLGLCRRRDPISRCRLRSRT 85


>SB_27| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 478 TWPARFQRSTRRRKTGKVGFPHRLTKEDAMKWF 576
           TW  R ++S R+RK   +  P  L+  D+M WF
Sbjct: 37  TWHLRRRQSLRKRKRA-MNVPEVLSPTDSMPWF 68


>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/51 (41%), Positives = 26/51 (50%)
 Frame = +3

Query: 243 YTVRLLVSVVMKRLLSIVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVIL 395
           +TV  LV  V+K LL        K K SLR     E++N GVTT  P  +L
Sbjct: 60  FTVNSLVVCVVKELLGSKHGHR-KVKLSLR----PEDVNAGVTTIVPGFVL 105


>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
          Length = 551

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 362 RRDNFSATGNFGFGIQEHIDLGIKYD 439
           ++ ++SATG+F   ++EHI  G + D
Sbjct: 306 KKSHYSATGSFDGSVEEHISEGAQED 331


>SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 266 RRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNF 394
           RR +        RGA A EI ++G+K +  E RR+     G +
Sbjct: 147 RREDTFPKEKEARGANANEISKQGVKEKARETRREIVRQEGKY 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,284,472
Number of Sequences: 59808
Number of extensions: 402363
Number of successful extensions: 985
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)