Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10422
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   153   1e-37
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   151   6e-37
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    30   1.3  
Z66497-6|CAA91288.1|  312|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z66497-5|CAA91287.1|  340|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    29   3.0  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  153 bits (370), Expect = 1e-37
 Identities = 69/83 (83%), Positives = 76/83 (91%)
 Frame = +2

Query: 257 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKY 436
           FGIRRNEKIAVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKY
Sbjct: 67  FGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKY 126

Query: 437 DPSIGIYGLDFYVVLGRPGFNVA 505
           DPSIGIYG+DFYVVL R G  +A
Sbjct: 127 DPSIGIYGMDFYVVLDRAGRRIA 149



 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 45/51 (88%), Positives = 48/51 (94%)
 Frame = +3

Query: 102 SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 254
           ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR
Sbjct: 15  ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVR 65



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 18/29 (62%), Positives = 24/29 (82%)
 Frame = +1

Query: 508 RRRKTGKVGFPHRLTKEDAMKWFQQKYDG 594
           RRR  G+VG  HR+ +E+++KWFQQKYDG
Sbjct: 151 RRRAPGRVGPSHRVEREESIKWFQQKYDG 179


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  151 bits (365), Expect = 6e-37
 Identities = 68/83 (81%), Positives = 75/83 (90%)
 Frame = +2

Query: 257 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKY 436
           FGIRRNEKIAVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKY
Sbjct: 67  FGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKY 126

Query: 437 DPSIGIYGLDFYVVLGRPGFNVA 505
           DP IGIYG+DFYVVL R G  V+
Sbjct: 127 DPGIGIYGMDFYVVLNRNGVRVS 149



 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 45/50 (90%), Positives = 47/50 (94%)
 Frame = +3

Query: 105 KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 254
           +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR
Sbjct: 16  RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVR 65



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +1

Query: 502 STRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 594
           S RRR  G++G  HR+ KE+ +KWFQQKYDG
Sbjct: 149 SKRRRAPGRIGPSHRVDKEETIKWFQQKYDG 179


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 296 TVRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 454
           ++R   AEE+  RG  +  Y E+RR     TG FG G +  +   I +  S+ +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406


>Z66497-6|CAA91288.1|  312|Caenorhabditis elegans Hypothetical
           protein K08F8.5b protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 284 QSFHYD--GYQKPHCIPSLGKYRLLSCELLQHLGGTSQPVTGFTNTD 150
           +SFHYD   ++K   +   GKY ++ CE    +      + G  NT+
Sbjct: 43  KSFHYDWVNFKKAQSLTIEGKYEMVRCEYSASMYWPEHGLLGCVNTE 89


>Z66497-5|CAA91287.1|  340|Caenorhabditis elegans Hypothetical
           protein K08F8.5a protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 284 QSFHYD--GYQKPHCIPSLGKYRLLSCELLQHLGGTSQPVTGFTNTD 150
           +SFHYD   ++K   +   GKY ++ CE    +      + G  NT+
Sbjct: 71  KSFHYDWVNFKKAQSLTIEGKYEMVRCEYSASMYWPEHGLLGCVNTE 117


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 397  AKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDT 260
            AK+ + G ++ PQ  FS+F+  +  FF  +    T+  N  I+ D+
Sbjct: 5666 AKMLQTG-IIPPQVNFSEFRDGMGQFFTVNGKKSTISQNSLISIDS 5710


>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 358 FIFSDFQTPLKDFF-CFSSSDCTMDSNLFIT 269
           ++  DF+  +KDFF C   SD T  S +F T
Sbjct: 300 YVIKDFRIGVKDFFKCGKKSDNTSSSTIFTT 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,317,096
Number of Sequences: 27780
Number of extensions: 298348
Number of successful extensions: 805
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)