Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10418
(753 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 23 3.1
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 5.4
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 5.4
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 22 5.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.4
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 23.0 bits (47), Expect = 3.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 204 EVEASDTIENVKAKIQDKREFPQISSD*FLRANSL 308
E + D E+ I+ ++EFP SS R NS+
Sbjct: 84 ETDDKDDDESDNENIKSQKEFPNSSSSDDERPNSI 118
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 5.4
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -2
Query: 626 TKICMPPRSLKTKCRVDSFW 567
T + +PP K+ C++D W
Sbjct: 135 TCLYVPPGIFKSTCKIDITW 154
Score = 22.2 bits (45), Expect = 5.4
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -3
Query: 172 TKICMPPRSLKTKCRVDSFW 113
T + +PP K+ C++D W
Sbjct: 135 TCLYVPPGIFKSTCKIDITW 154
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.2 bits (45), Expect = 5.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 501 SGGIPSLS*ILAFTFSMVSDASTSNV 424
+GG+PS S L + +M DA +N+
Sbjct: 592 TGGVPSKSPTLTHSPTMYGDALNANL 617
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 22.2 bits (45), Expect = 5.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 670 SDTIENVKAKIQDKEGIPPDQQRLI 744
+DT+ K KI K I PD + L+
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLV 756
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.4
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -2
Query: 614 MPPRSLKTKCRVDSFW 567
+PP K+ C++D W
Sbjct: 102 VPPGIFKSTCKIDIAW 117
Score = 21.4 bits (43), Expect = 9.4
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -3
Query: 160 MPPRSLKTKCRVDSFW 113
+PP K+ C++D W
Sbjct: 102 VPPGIFKSTCKIDIAW 117
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.4
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -2
Query: 614 MPPRSLKTKCRVDSFW 567
+PP K+ C++D W
Sbjct: 102 VPPGIFKSTCKIDITW 117
Score = 21.4 bits (43), Expect = 9.4
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -3
Query: 160 MPPRSLKTKCRVDSFW 113
+PP K+ C++D W
Sbjct: 102 VPPGIFKSTCKIDITW 117
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.4
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -2
Query: 614 MPPRSLKTKCRVDSFW 567
+PP K+ C++D W
Sbjct: 102 VPPGIFKSTCKIDITW 117
Score = 21.4 bits (43), Expect = 9.4
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -3
Query: 160 MPPRSLKTKCRVDSFW 113
+PP K+ C++D W
Sbjct: 102 VPPGIFKSTCKIDITW 117
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 9.4
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -2
Query: 614 MPPRSLKTKCRVDSFW 567
+PP K+ C++D W
Sbjct: 170 VPPGIFKSTCKIDITW 185
Score = 21.4 bits (43), Expect = 9.4
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -3
Query: 160 MPPRSLKTKCRVDSFW 113
+PP K+ C++D W
Sbjct: 170 VPPGIFKSTCKIDITW 185
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 9.4
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -2
Query: 614 MPPRSLKTKCRVDSFW 567
+PP K+ C++D W
Sbjct: 170 VPPGIFKSTCKIDITW 185
Score = 21.4 bits (43), Expect = 9.4
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -3
Query: 160 MPPRSLKTKCRVDSFW 113
+PP K+ C++D W
Sbjct: 170 VPPGIFKSTCKIDITW 185
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,778
Number of Sequences: 438
Number of extensions: 4628
Number of successful extensions: 22
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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