Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10417
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.3  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   5.8  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   7.6  

>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 482 LVNRQDNVELTPILRYTHCTRPRTQLHYIQMTFWREREE*NCVICFVLSF*CFFRFK 652
           L N    + + P L Y       + LH I+++ WR R++  C+I  +  F  FF F+
Sbjct: 6   LANLPILLAIHPALHYATYRVSPSSLH-IRLSSWRSRKQTGCLIKGIPLFLFFFFFE 61


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = -1

Query: 344 HSFNLNHTSL---STF---TNNFFVFKVLYSVCYLNPLIF 243
           H+F+L+H +L   S+F    ++ F F    S+C L PL+F
Sbjct: 673 HNFSLHHLNLYYESSFGAKASSLFAFLPQLSLCMLIPLVF 712


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -3

Query: 792 EVSVVSVYCIRSSRSYCNLNKFEFLHFPIFVHFHKYLTVNKP 667
           E+S + + C ++  SY  LN+ + L +PI    ++ + +  P
Sbjct: 260 EISSMDILCRKTFLSYQTLNRIQSLVYPIAYKTNENMLICAP 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,047,804
Number of Sequences: 5004
Number of extensions: 58998
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)