Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10417
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016415-5|AAW88414.1|  305|Caenorhabditis elegans Serpentine re...    30   1.8  
AF003386-7|AAB54258.2|  412|Caenorhabditis elegans Hypothetical ...    29   3.1  

>AF016415-5|AAW88414.1|  305|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 30 protein.
          Length = 305

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -3

Query: 555 CVRGLVQCVYLSIGVNSTLSWRLTRYCQPRARHVYFYYHL*IID*C 418
           CV G+V C  + + +N+ L W++      R R +  +Y+  ++D C
Sbjct: 9   CVIGIV-CANIEVLLNANLVWKIVLKKSQRKREMGLFYYRFVLDVC 53


>AF003386-7|AAB54258.2|  412|Caenorhabditis elegans Hypothetical
           protein F59E12.8 protein.
          Length = 412

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 351 IISFIQFKSYKFVNVHQ*FFCIQGFVFSVLFKSFN 247
           I+ F++FKS K       + CIQ  +F VL  +FN
Sbjct: 80  ILRFVEFKSTK--ETESSYECIQNSIFQVLLSTFN 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,903,208
Number of Sequences: 27780
Number of extensions: 334723
Number of successful extensions: 769
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)