Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10417
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   2.0  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              23   2.7  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   8.1  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 500 NVELTPILRYTHCTRPRTQLHYI 568
           N  +  ++RYT C  P+T    I
Sbjct: 399 NAPVNQLIRYTRCENPKTNFFSI 421


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 711 ENEEIQIYSDCSTSEMIVYN 770
           ENE++Q++S+C   +   Y+
Sbjct: 55  ENEKVQLFSECLIKKFNAYD 74


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 346 YYNNFKISTNISRTES 393
           Y NNF+ S  IS  ES
Sbjct: 42  YINNFETSNGISHQES 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,863
Number of Sequences: 438
Number of extensions: 4120
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)