Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10416
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 60 2e-09
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 60 2e-09
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 56 4e-08
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 54 2e-07
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 52 4e-07
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 52 7e-07
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 49 5e-06
08_02_1289 - 25923916-25924586,25925148-25926630 31 1.0
03_05_0039 - 20125473-20126222 30 2.3
06_03_0609 + 22710442-22713502,22713596-22713948 29 4.1
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110... 28 9.4
01_07_0264 - 42388455-42388565,42388656-42388688,42388792-423889... 28 9.4
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Frame = +3
Query: 561 RKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLP-VGENLQDHLFVPVFYTKP 734
+ EV+VSAG + SPQLL+LSG+GP+ HLE IEV D P VG+ + D+ VF P
Sbjct: 277 KNEVIVSAGTLGSPQLLMLSGVGPQAHLEAHGIEVIVDQPMVGQGVADNPMNSVFIPSP 335
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 60.1 bits (139), Expect = 2e-09
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 6/89 (6%)
Frame = +3
Query: 516 GVLLN--KGGRDIAV---NVRKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLP 680
GVL + +GG +A R E+++SAGA+ SPQLL+LSG+GP HLE+ I + D P
Sbjct: 246 GVLYHDARGGSHMAYLNHGARNEIILSAGALGSPQLLMLSGVGPADHLEEFGISLVLDHP 305
Query: 681 -VGENLQDHLFVPVFYTKPGDKKATTLPI 764
VG+ + D+ ++ P + + + +
Sbjct: 306 GVGQGMSDNPMNAIYVPSPSPVELSLIQV 334
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 55.6 bits (128), Expect = 4e-08
Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Frame = +3
Query: 555 NVRKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIE-VKADLPVGENLQDHLFVPVFY-T 728
N E+++SAGAI SPQLLLLSGIGPRK L+ NI V + VG+ + D+ +F T
Sbjct: 288 NRDSEIIISAGAIGSPQLLLLSGIGPRKELKKHNISVVLRNEHVGKGMSDNPMNSIFIPT 347
Query: 729 KPGDKKA 749
K K++
Sbjct: 348 KDAPKQS 354
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 53.6 bits (123), Expect = 2e-07
Identities = 27/47 (57%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Frame = +3
Query: 567 EVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLP-VGENLQDH 704
EV++SAG++ SPQLLLLSGIGP L L I V AD+P VG+++ D+
Sbjct: 301 EVILSAGSLGSPQLLLLSGIGPANDLTSLGIPVFADVPDVGKHMFDN 347
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 50 RGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFE 163
R +VLGG++SIN FY R + D+ +G E +++
Sbjct: 132 RARVLGGATSINAGFYSRAH-PDWFRSHGEGGEAMNWD 168
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 52.4 bits (120), Expect = 4e-07
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +3
Query: 567 EVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLP-VGENLQDHLFVPVFYTKPGDK 743
E+++SAGA+ SPQLL+LSG+GP HL I + + P VG+ + D+ ++ P
Sbjct: 275 EIILSAGAMGSPQLLMLSGVGPADHLRSFGITLVLNQPAVGQGMSDNPMNAIYVPSPSPV 334
Query: 744 KATTLPI 764
+ + + +
Sbjct: 335 EVSLIQV 341
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 51.6 bits (118), Expect = 7e-07
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +3
Query: 561 RKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLP-VGENLQDHLFVPVFYTKP 734
+ EV+V+AG + SPQLL+LSG+GPR LE I D P VG+ + D+ VF P
Sbjct: 272 KSEVIVTAGTLGSPQLLMLSGVGPRGELEKHGILPVLDQPRVGQGVADNPMNSVFVPSP 330
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 48.8 bits (111), Expect = 5e-06
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 555 NVRKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKA-DLPVGENLQDHLFVPVF 722
N E++VSAGAI SPQLLLLSGIGP+ L I V + VG+ + D+ +F
Sbjct: 274 NCDSEIIVSAGAIGSPQLLLLSGIGPKNDLRSHKIPVVLHNKYVGKGMADNPMNSIF 330
>08_02_1289 - 25923916-25924586,25925148-25926630
Length = 717
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 217 GGD*IPQQGRLSHVASDD--NMHEIEDLIIKAAVELGLKNLTDC 342
GG +QGRL+ V DD E++DL+ +A LG NL C
Sbjct: 379 GGGKAGEQGRLTFVRDDDRGRFFELQDLLKASAEVLGAANLGVC 422
>03_05_0039 - 20125473-20126222
Length = 249
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 32 KGCAWPRGKVLGGSSSINLMFY 97
+GCA GKVLGGS S+ FY
Sbjct: 223 RGCAKEGGKVLGGSCSLRYDFY 244
>06_03_0609 + 22710442-22713502,22713596-22713948
Length = 1137
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = -3
Query: 673 SALTSMFRSSKCLRGPIPESNNSCGELIAPAETTTSFLTFTAISRPPLFNKTPLT 509
S+L + S CL G IPE S G + + F+ PPLFN + LT
Sbjct: 316 SSLLYLRLSQNCLDGSIPE---SLGHIPTLQTLMLTLNNFSGTIPPPLFNMSSLT 367
>09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,
1107272-1107531,1107897-1108084,1108187-1108311,
1108485-1108521,1108802-1108893,1109023-1109133,
1109242-1109352,1109576-1109669,1109833-1109945,
1110316-1110411,1110510-1110617,1110665-1110814,
1110910-1110990,1111205-1111276,1111553-1111646,
1111759-1111787,1111870-1111967,1112065-1112160,
1112399-1112620,1113002-1113158,1113472-1113627,
1113703-1113930
Length = 1045
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 546 IAVNVRKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLPVGENL 695
+AV +K++ SAG +NSP G+ P + + L + A LPVG+ +
Sbjct: 939 VAVPAQKQLKYSAGIVNSPS----KGV-PAFNKQHLKMVPMAQLPVGKKV 983
>01_07_0264 -
42388455-42388565,42388656-42388688,42388792-42388905,
42389011-42389100,42389173-42389268,42389363-42389404,
42389498-42389608,42392258-42392440,42392518-42392961
Length = 407
Score = 27.9 bits (59), Expect = 9.4
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -2
Query: 617 EQQQLWGVNSTSGNDNFFPYI 555
++Q+LWG N + D++F Y+
Sbjct: 91 DEQELWGPNVQTSQDDYFDYV 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,233,069
Number of Sequences: 37544
Number of extensions: 481321
Number of successful extensions: 1258
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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