Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10416
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   4e-14
SB_15136| Best HMM Match : Peptidase_S13 (HMM E-Value=0.27)            29   5.4  
SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)                   28   9.5  
SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 29/50 (58%), Positives = 39/50 (78%)
 Frame = +2

Query: 47  PRGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFEDVLPYFKKSES 196
           PRG+V GGSSS+N M Y+RG+  DYD W  +G +GWS+ D LPYF+KS++
Sbjct: 239 PRGRVWGGSSSLNAMVYIRGHAYDYDRWEREGAQGWSYADCLPYFRKSQT 288


>SB_15136| Best HMM Match : Peptidase_S13 (HMM E-Value=0.27)
          Length = 638

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 5   EGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFED 166
           +G C++      +W     LG ++ + L+    GN  D ++ AADG +  S +D
Sbjct: 478 DGYCQSETMGKASWDVSAYLGRTAHVRLVDASSGNWDDVNDGAADGADDDSCDD 531


>SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)
          Length = 596

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = +1

Query: 370 KSFTTTKGGTRFSTARAFLSPIKDRKNLHVIKNAIATKIVFK 495
           K FTTTK G  F       S  KDRK    +K  IA+  V K
Sbjct: 5   KYFTTTKKGEIFELKAELNSDKKDRKK-EAVKKVIASMTVGK 45


>SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = -3

Query: 268 RQKLHEITALAVVFSRLRVKFTHEAFTFLKVGQDVLETPAFISIGSPFVVIGLVTSNVKH 89
           R +L + T    + + L+ K+T  A+ FL  GQ+V E    +S     V I +  + VK+
Sbjct: 626 RHQLRQ-TFFVNITTPLKEKYTRAAYLFLGPGQEVREL-RMLSTSDHGVHITVTVNGVKY 683

Query: 88  QIDAAASTEH 59
            +  A +T+H
Sbjct: 684 TV--AIATKH 691


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,690,127
Number of Sequences: 59808
Number of extensions: 521480
Number of successful extensions: 1317
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)