Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10416
(765 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC034502-1|AAH34502.1| 594|Homo sapiens choline dehydrogenase p... 72 3e-12
AJ272267-1|CAB75961.1| 482|Homo sapiens choline dehydrogenase p... 72 3e-12
Z84483-2|CAC94774.1| 995|Homo sapiens 46H23.2 (novel RhoGAP dom... 31 3.4
BC046563-1|AAH46563.1| 687|Homo sapiens STARD13 protein protein. 31 3.4
AY366448-1|AAQ72791.1| 1113|Homo sapiens Rho GTPase activating p... 31 3.4
AY082591-1|AAL91650.1| 995|Homo sapiens deleted in liver cancer... 31 3.4
AY082590-1|AAL91649.1| 1105|Homo sapiens deleted in liver cancer... 31 3.4
AY082589-1|AAL91648.1| 1113|Homo sapiens deleted in liver cancer... 31 3.4
AL627232-1|CAM17900.1| 1113|Homo sapiens START domain containing... 31 3.4
AL139187-2|CAM23626.1| 1105|Homo sapiens START domain containing... 31 3.4
AL139187-1|CAM23625.1| 1113|Homo sapiens START domain containing... 31 3.4
AL049801-1|CAB42562.1| 995|Homo sapiens hypothetical protein pr... 31 3.4
>BC034502-1|AAH34502.1| 594|Homo sapiens choline dehydrogenase
protein.
Length = 594
Score = 71.7 bits (168), Expect = 3e-12
Identities = 27/50 (54%), Positives = 35/50 (70%)
Frame = +2
Query: 44 WPRGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFEDVLPYFKKSE 193
WPRG+V GGSSS+N M YVRG+ DY+ W G GW + LPYF+K++
Sbjct: 122 WPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQ 171
Score = 65.3 bits (152), Expect = 2e-10
Identities = 36/65 (55%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +3
Query: 516 GVLLNKGGRDIAVNVRKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLP-VGEN 692
GV K G+ KEV++S GAINSPQLL+LSGIG L+ L I V LP VG+N
Sbjct: 274 GVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQN 333
Query: 693 LQDHL 707
LQDHL
Sbjct: 334 LQDHL 338
>AJ272267-1|CAB75961.1| 482|Homo sapiens choline dehydrogenase
protein.
Length = 482
Score = 71.7 bits (168), Expect = 3e-12
Identities = 27/50 (54%), Positives = 35/50 (70%)
Frame = +2
Query: 44 WPRGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFEDVLPYFKKSE 193
WPRG+V GGSSS+N M YVRG+ DY+ W G GW + LPYF+K++
Sbjct: 10 WPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQ 59
Score = 65.3 bits (152), Expect = 2e-10
Identities = 36/65 (55%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +3
Query: 516 GVLLNKGGRDIAVNVRKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLP-VGEN 692
GV K G+ KEV++S GAINSPQLL+LSGIG L+ L I V LP VG+N
Sbjct: 162 GVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQN 221
Query: 693 LQDHL 707
LQDHL
Sbjct: 222 LQDHL 226
>Z84483-2|CAC94774.1| 995|Homo sapiens 46H23.2 (novel RhoGAP domain
protein) protein.
Length = 995
Score = 31.5 bits (68), Expect = 3.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 504 GTGLKNDFGGDSVLDDMEVLPVLDRAKESSGRTEPSSTLGGC 379
GTG++N +SVL D+ V ESSG ++ S G C
Sbjct: 56 GTGMRNTTSSESVLTDLSEPEVCSIHSESSGGSDSRSQPGQC 97
>BC046563-1|AAH46563.1| 687|Homo sapiens STARD13 protein protein.
Length = 687
Score = 31.5 bits (68), Expect = 3.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 504 GTGLKNDFGGDSVLDDMEVLPVLDRAKESSGRTEPSSTLGGC 379
GTG++N +SVL D+ V ESSG ++ S G C
Sbjct: 166 GTGMRNTTSSESVLTDLSEPEVCSIHSESSGGSDSRSQPGQC 207
>AY366448-1|AAQ72791.1| 1113|Homo sapiens Rho GTPase activating
protein protein.
Length = 1113
Score = 31.5 bits (68), Expect = 3.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 504 GTGLKNDFGGDSVLDDMEVLPVLDRAKESSGRTEPSSTLGGC 379
GTG++N +SVL D+ V ESSG ++ S G C
Sbjct: 174 GTGMRNTTSSESVLTDLSEPEVCSIHSESSGGSDSRSQPGQC 215
>AY082591-1|AAL91650.1| 995|Homo sapiens deleted in liver cancer 2
gamma protein.
Length = 995
Score = 31.5 bits (68), Expect = 3.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 504 GTGLKNDFGGDSVLDDMEVLPVLDRAKESSGRTEPSSTLGGC 379
GTG++N +SVL D+ V ESSG ++ S G C
Sbjct: 56 GTGMRNTTSSESVLTDLSEPEVCSIHSESSGGSDSRSQPGQC 97
>AY082590-1|AAL91649.1| 1105|Homo sapiens deleted in liver cancer 2
beta protein.
Length = 1105
Score = 31.5 bits (68), Expect = 3.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 504 GTGLKNDFGGDSVLDDMEVLPVLDRAKESSGRTEPSSTLGGC 379
GTG++N +SVL D+ V ESSG ++ S G C
Sbjct: 166 GTGMRNTTSSESVLTDLSEPEVCSIHSESSGGSDSRSQPGQC 207
>AY082589-1|AAL91648.1| 1113|Homo sapiens deleted in liver cancer 2
alpha protein.
Length = 1113
Score = 31.5 bits (68), Expect = 3.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 504 GTGLKNDFGGDSVLDDMEVLPVLDRAKESSGRTEPSSTLGGC 379
GTG++N +SVL D+ V ESSG ++ S G C
Sbjct: 174 GTGMRNTTSSESVLTDLSEPEVCSIHSESSGGSDSRSQPGQC 215
>AL627232-1|CAM17900.1| 1113|Homo sapiens START domain containing 13
protein.
Length = 1113
Score = 31.5 bits (68), Expect = 3.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 504 GTGLKNDFGGDSVLDDMEVLPVLDRAKESSGRTEPSSTLGGC 379
GTG++N +SVL D+ V ESSG ++ S G C
Sbjct: 174 GTGMRNTTSSESVLTDLSEPEVCSIHSESSGGSDSRSQPGQC 215
>AL139187-2|CAM23626.1| 1105|Homo sapiens START domain containing 13
protein.
Length = 1105
Score = 31.5 bits (68), Expect = 3.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 504 GTGLKNDFGGDSVLDDMEVLPVLDRAKESSGRTEPSSTLGGC 379
GTG++N +SVL D+ V ESSG ++ S G C
Sbjct: 166 GTGMRNTTSSESVLTDLSEPEVCSIHSESSGGSDSRSQPGQC 207
>AL139187-1|CAM23625.1| 1113|Homo sapiens START domain containing 13
protein.
Length = 1113
Score = 31.5 bits (68), Expect = 3.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 504 GTGLKNDFGGDSVLDDMEVLPVLDRAKESSGRTEPSSTLGGC 379
GTG++N +SVL D+ V ESSG ++ S G C
Sbjct: 174 GTGMRNTTSSESVLTDLSEPEVCSIHSESSGGSDSRSQPGQC 215
>AL049801-1|CAB42562.1| 995|Homo sapiens hypothetical protein
protein.
Length = 995
Score = 31.5 bits (68), Expect = 3.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 504 GTGLKNDFGGDSVLDDMEVLPVLDRAKESSGRTEPSSTLGGC 379
GTG++N +SVL D+ V ESSG ++ S G C
Sbjct: 56 GTGMRNTTSSESVLTDLSEPEVCSIHSESSGGSDSRSQPGQC 97
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,744,756
Number of Sequences: 237096
Number of extensions: 2590201
Number of successful extensions: 4753
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4740
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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