Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10416
(765 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14190.1 68414.m01679 glucose-methanol-choline (GMC) oxidored... 55 6e-08
At1g14185.1 68414.m01678 glucose-methanol-choline (GMC) oxidored... 55 6e-08
At3g56060.1 68416.m06229 glucose-methanol-choline (GMC) oxidored... 54 1e-07
At5g51950.1 68418.m06447 glucose-methanol-choline (GMC) oxidored... 53 2e-07
At1g12570.1 68414.m01459 glucose-methanol-choline (GMC) oxidored... 53 2e-07
At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative / (R... 52 3e-07
At1g72970.1 68414.m08439 glucose-methanol-choline (GMC) oxidored... 50 2e-06
At5g51930.1 68418.m06442 glucose-methanol-choline (GMC) oxidored... 49 4e-06
At1g22220.1 68414.m02778 F-box family protein contains F-box dom... 29 4.5
At2g05120.1 68415.m00539 expressed protein 28 5.9
>At1g14190.1 68414.m01679 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 501
Score = 54.8 bits (126), Expect = 6e-08
Identities = 26/49 (53%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Frame = +3
Query: 561 RKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADL-PVGENLQDH 704
R EV+++AGA+ SPQ+LLLSGIGP HL+D +I V +L VG + D+
Sbjct: 241 RGEVILAAGALGSPQILLLSGIGPENHLKDFDIPVIVNLKEVGRKMSDN 289
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/63 (39%), Positives = 33/63 (52%)
Frame = +2
Query: 50 RGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFEDVLPYFKKSESFMGKFDAEATK 229
RG+VLGGSS+IN FY R + DE+ GW V +K ES + F E T+
Sbjct: 88 RGRVLGGSSAINGGFYSRAS----DEFVK--KAGWDKGLVQESYKWVESKV-VFMPELTQ 140
Query: 230 YHS 238
+ S
Sbjct: 141 WQS 143
>At1g14185.1 68414.m01678 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 503
Score = 54.8 bits (126), Expect = 6e-08
Identities = 26/49 (53%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Frame = +3
Query: 561 RKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADL-PVGENLQDH 704
R EV+++AGA+ SPQ+LLLSGIGP HL D +I V +L VG+ + D+
Sbjct: 261 RGEVILAAGALGSPQILLLSGIGPENHLNDFDIPVIVNLKEVGKQMSDN 309
Score = 31.9 bits (69), Expect = 0.48
Identities = 25/63 (39%), Positives = 34/63 (53%)
Frame = +2
Query: 50 RGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFEDVLPYFKKSESFMGKFDAEATK 229
RG+VLGGSS+IN FY R + DE+ GW + V +K ES + F E T+
Sbjct: 109 RGRVLGGSSAINGGFYSRAS----DEFVK--KAGWDKDLVQESYKWVESKV-VFMPELTR 161
Query: 230 YHS 238
+ S
Sbjct: 162 WQS 164
>At3g56060.1 68416.m06229 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 577
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/58 (50%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = +3
Query: 567 EVVVSAGAINSPQLLLLSGIGPRKHLEDLNIE-VKADLP-VGENLQDHLFVPVFYTKP 734
EV++SAGAI SPQLL+LSG+GP HL + V D P VG+ + D+ PVF P
Sbjct: 274 EVILSAGAIASPQLLMLSGVGPAAHLAAYRVNPVIVDQPMVGQGMGDNPMNPVFIPSP 331
>At5g51950.1 68418.m06447 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 586
Score = 53.2 bits (122), Expect = 2e-07
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +3
Query: 501 YQQVSGVLLNKGGRDIAVNVRKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIE-VKADL 677
+Q +GVL +K ++ N EV++SAGAI SPQLL+LSGIGP HL I+ + D
Sbjct: 253 FQDANGVL-HKA--ELEKNSMNEVILSAGAIGSPQLLMLSGIGPAAHLAAHGIKPLVLDH 309
Query: 678 P-VGENLQDHLFVPVFYTKP 734
P VG+ + D+ +F P
Sbjct: 310 PMVGQGMGDNPMNAIFIPSP 329
>At1g12570.1 68414.m01459 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 572
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +3
Query: 567 EVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLP-VGENLQDHLFVPVFYTKP 734
E+++SAG + SPQLL+LSG+GP L+ NI V D P VG+ + D+ VF P
Sbjct: 272 EIILSAGTLGSPQLLMLSGVGPSAQLQAQNITVVMDQPHVGQGMYDNPMNAVFVPSP 328
>At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative /
(R)-oxynitrilase, putative similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|52707];
contains Pfam protile PF00732 GMC oxidoreductase
Length = 552
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/49 (55%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = +3
Query: 561 RKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLP-VGENLQDH 704
R EV++SAGA+ SPQLL LSGIGPR +L I V D P VG+ + D+
Sbjct: 282 RGEVILSAGALGSPQLLFLSGIGPRSYLSTWGIPVALDQPHVGDFVYDN 330
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 50 RGKVLGGSSSINLMFYVRGNKADYD 124
RG+VLGGSS+IN FY R +K ++
Sbjct: 126 RGRVLGGSSAINAGFYSRADKQFFE 150
>At1g72970.1 68414.m08439 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 594
Score = 50.0 bits (114), Expect = 2e-06
Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 6/72 (8%)
Frame = +3
Query: 507 QVSGVLLN--KGGRDIAV-NVRK--EVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKA 671
+V+GV+ KG + A+ + RK EV++S+GAI SPQ+L+LSGIGP+K L+ L I V
Sbjct: 263 RVTGVIFKDEKGNQHQALLSNRKGSEVILSSGAIGSPQMLMLSGIGPKKELQRLKIPVVL 322
Query: 672 DLP-VGENLQDH 704
+ VG+ + D+
Sbjct: 323 ENEHVGKGMADN 334
>At5g51930.1 68418.m06442 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 582
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Frame = +3
Query: 543 DIAVNVRKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIE-VKADLP-VGENLQDH 704
++A EV++SAGA+ SPQLL+LSG+GP HLE + + D P VG+ + D+
Sbjct: 285 NLANKATNEVILSAGALGSPQLLMLSGVGPAVHLEAHGVNPLVLDQPMVGQGMADN 340
>At1g22220.1 68414.m02778 F-box family protein contains F-box domain
Pfam:PF00646
Length = 314
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 706 KWSCKFSPTGKSALTSMFRSSKCLRGPIPESNNSCGELIAPAET 575
KW +F T KS + FRS+ + P+ S E + +T
Sbjct: 122 KWKAEFGKTLKSCVIVAFRSAGTVSSPVAVEGESDAEFVTGLKT 165
>At2g05120.1 68415.m00539 expressed protein
Length = 1234
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +2
Query: 107 NKADYDEW----AADGNEGWSFEDVLPYFKKSESF 199
N AD D+W A NEGWS E+ L + + F
Sbjct: 1122 NAADQDDWDRHHQASTNEGWSEEETLQNLRNTALF 1156
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,426,172
Number of Sequences: 28952
Number of extensions: 374290
Number of successful extensions: 1077
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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