Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10413
(805 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 163 2e-41
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 46 6e-06
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 44 3e-05
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 33 0.063
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 31 0.14
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 30 0.33
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 29 0.77
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 28 1.4
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 28 1.8
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 28 1.8
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 2.4
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 27 3.1
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo... 27 3.1
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 27 4.1
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 5.5
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 5.5
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 5.5
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.5
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 25 9.5
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 25 9.5
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.5
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 9.5
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 163 bits (397), Expect = 2e-41
Identities = 71/98 (72%), Positives = 85/98 (86%)
Frame = +1
Query: 508 EQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTG 687
EQVRQHL+RLP+IDP TRT+++CG+PNVGKSSF+NK+TRA V+VQPYAFTTKSL+VGH
Sbjct: 152 EQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFMNKVTRAQVDVQPYAFTTKSLFVGHFD 211
Query: 688 YKYLRWQVIDTPGILDHPLEETQCYEMPAVTAFGSSQS 801
YKYLRWQVIDTPGILDHPLE+ EM ++TA +S
Sbjct: 212 YKYLRWQVIDTPGILDHPLEQMNTIEMQSITAMAHLRS 249
Score = 147 bits (356), Expect = 2e-36
Identities = 62/86 (72%), Positives = 80/86 (93%)
Frame = +2
Query: 257 EFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCK 436
EFPKL+D+HPF+ADL+N+LYD+DH K+ L QL+TA+HL++NVA+DY+RLLKYGDSLYRCK
Sbjct: 68 EFPKLNDIHPFHADLLNILYDRDHLKIALSQLSTAKHLVENVARDYIRLLKYGDSLYRCK 127
Query: 437 QLKRAALGRMATIMKRQGANLTYLNR 514
QLKRAALGRMATI+KRQ ++L +L +
Sbjct: 128 QLKRAALGRMATIIKRQKSSLEFLEQ 153
Score = 77.4 bits (182), Expect = 2e-15
Identities = 33/62 (53%), Positives = 45/62 (72%)
Frame = +3
Query: 72 FKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRI 251
FK I +P F+D++LS+TQRKTPTV+ +KISRIRGFY RKVK+TQ ++L I
Sbjct: 6 FKNITPIPDVNTFLDVVLSRTQRKTPTVIRSGFKISRIRGFYGRKVKFTQDTITEKLDSI 65
Query: 252 IR 257
++
Sbjct: 66 LQ 67
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 46.0 bits (104), Expect = 6e-06
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +1
Query: 562 TIIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTGYKYLRWQVIDTPGILD 735
T+ GFP+VGKS+ + ++T E Y FTT + G Y + Q++D PGI++
Sbjct: 65 TVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNGAKIQILDLPGIIE 122
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 565 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTGYKYLRWQVIDTPGILD 735
+ GFP+VGKS+ ++ IT+ Y FTT + G Y Q++D PGI++
Sbjct: 65 VAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEYDGAEIQMLDLPGIIE 121
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 32.7 bits (71), Expect = 0.063
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = +1
Query: 571 ICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVG------HTGYKYLRWQVIDTPGIL 732
+ G PN GKS+ +N +T + +V Y FTT +G + ++++ D PGI+
Sbjct: 241 LVGLPNAGKSTLLNCLTASKSKVGEYEFTTIYPKIGTIKTTMPDDHSSFQYRLADIPGII 300
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 31.5 bits (68), Expect = 0.14
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +1
Query: 511 QVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRADV-EVQPYAFTTKSLYVGHTG 687
Q+ + A L S D ++ + GFPN GKSS IN + + V V P TK V
Sbjct: 296 QILRQFASLHS-DKKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPGETK---VWQYV 351
Query: 688 YKYLRWQVIDTPGIL 732
R +ID PGI+
Sbjct: 352 ALMKRIFLIDCPGIV 366
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 30.3 bits (65), Expect = 0.33
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 418 FVVSVQTAQTCGSGSHGHHHETARS*SYIPEQVRQHLARLPSID-PYTRTIIICGFPNVG 594
F ++ GSG+ H++A + S I ++ + + T+ + G+PNVG
Sbjct: 222 FFPTIPMRSASGSGNSNLKHQSASASSTISNLLKSLKSYSAKKKLKSSLTVGVIGYPNVG 281
Query: 595 KSSFINKI 618
KSS IN +
Sbjct: 282 KSSVINAL 289
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 29.1 bits (62), Expect = 0.77
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +3
Query: 27 DTKIALN*NKMSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRK 206
+TK+ LN ++S+ FKK + A D +K + P V+++H F +
Sbjct: 298 ETKVYLNNERISISGFKKYVEMYLASD------TKPDEEPPRVIYEHVNDRWDVAFAVSD 351
Query: 207 VKYTQQNFHDRLSRI 251
++ Q +F + +S I
Sbjct: 352 GQFKQVSFVNNISTI 366
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 562 TIIICGFPNVGKSSFINKITRA-DVEVQPYAFTTKSLYVGHTGYKYLRWQVIDTPGILDH 738
T + G+PNVGKSS IN + + V V TK + K ++D PG++
Sbjct: 303 TFGLVGYPNVGKSSTINALVGSKKVSVSSTPGKTKHFQTINLSEKV---SLLDCPGLVFP 359
Query: 739 PLEETQ 756
TQ
Sbjct: 360 SFATTQ 365
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 715 DTPGILDHPLEETQCYEMPAVTAFGSSQSC 804
D+ ++DH + ET E+P +A+ S++C
Sbjct: 250 DSEKLIDHLIHETGNNELPVASAYEQSKAC 279
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 571 ICGFPNVGKSSFINKITRA 627
I G PNVGKS+F IT++
Sbjct: 25 IVGMPNVGKSTFFRAITKS 43
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 78 KIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGF 194
KI VV + + + S+ QRK +++ KH I + GF
Sbjct: 1670 KIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGF 1708
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 3.1
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Frame = +1
Query: 562 TIIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHT-------------GYKYLR 702
TI++CG GK++F N + ++ + T K T G+ ++
Sbjct: 32 TIMLCGASGTGKTTFFNTLFATSLQPEKSYETAKETIAKKTLEVKKNKAVIEEDGF-HIN 90
Query: 703 WQVIDTPGILDHPLEETQCYEMPA 774
V+DTPG D ++ T C+ A
Sbjct: 91 LTVLDTPGFGDF-IDNTSCWNTVA 113
>SPBC16A3.06 |||tRNA specific adenosine deaminase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 27.1 bits (57), Expect = 3.1
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 743 WKKRNVMKCQRSQLLAHL 796
WKK N+ +CQ+ Q+L ++
Sbjct: 356 WKKLNIKRCQQKQILRNI 373
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 194 KPTYS*YFIMLVNDCRSFPLCFR*N 120
+PTY+ YFI L++D R C+ N
Sbjct: 95 RPTYTHYFIRLLHDKRLLQKCYTQN 119
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 664 SLYVGHTGYKYLRWQVIDTPGILDHPL 744
S YV YK L W +D + DHPL
Sbjct: 720 SFYVERDNYKLL-WTQLDLLAVTDHPL 745
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 565 IIICGFPNVGKSSFINKITRAD 630
++ICG VGKSS I+ + + D
Sbjct: 6 VVICGDQGVGKSSLISALIQED 27
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 577 GFPNVGKSSFINKITRADVEVQPYAFTT 660
G P+ GKS+ +N +T A + + FTT
Sbjct: 11 GKPSSGKSTMLNALTDATAKTGNFPFTT 38
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 9.5
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -2
Query: 597 FSDIWESTDDYRPGV 553
FS++W+S+ D+ PG+
Sbjct: 297 FSEVWKSSYDFSPGI 311
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Frame = +1
Query: 565 IIICGFPNVGKSSFINKITRADVE------VQPYAFTTKSLYVGHTGYKYLRWQVIDTPG 726
+ G PN GKSS +N + + V Y TK + + + ++DTPG
Sbjct: 148 VYFVGMPNTGKSSILNSLRNVALRKSKSAIVGNYPGVTKRISEIVRLFNDMDVYMLDTPG 207
Query: 727 IL 732
I+
Sbjct: 208 IM 209
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 9.5
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -2
Query: 597 FSDIWESTDDYRPGV 553
FS++W+S+ D+ PG+
Sbjct: 297 FSEVWKSSYDFSPGI 311
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 9.5
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -2
Query: 597 FSDIWESTDDYRPGV 553
FS++W+S+ D+ PG+
Sbjct: 297 FSEVWKSSYDFSPGI 311
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 77 KDCCSPYS*GLYRHNFIEN 133
K SPYS G Y++N IEN
Sbjct: 501 KSSSSPYSRGPYKYNRIEN 519
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,478,051
Number of Sequences: 5004
Number of extensions: 75827
Number of successful extensions: 242
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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