Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10413
(805 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.) 170 1e-42
SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36) 46 3e-05
SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31) 45 6e-05
SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19) 38 0.013
SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05) 34 0.16
SB_32162| Best HMM Match : Ras (HMM E-Value=4.7e-31) 33 0.36
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.36
SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07) 31 0.83
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19) 29 3.3
SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 29 4.4
SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 170 bits (414), Expect = 1e-42
Identities = 74/98 (75%), Positives = 86/98 (87%)
Frame = +1
Query: 508 EQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTG 687
EQVRQHL+RLPSIDP TRT+++CGFPNVGKSSF+NK+TRADV+VQPYAFTTKSL+VGH
Sbjct: 67 EQVRQHLSRLPSIDPNTRTLLVCGFPNVGKSSFMNKVTRADVDVQPYAFTTKSLFVGHMD 126
Query: 688 YKYLRWQVIDTPGILDHPLEETQCYEMPAVTAFGSSQS 801
YKYLRWQV+DTPG+LDHPLEE EM A+TA +S
Sbjct: 127 YKYLRWQVVDTPGVLDHPLEERNTIEMQAITALAHLRS 164
Score = 74.9 bits (176), Expect(2) = 1e-15
Identities = 32/40 (80%), Positives = 35/40 (87%)
Frame = +2
Query: 263 PKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNV 382
P DVHPFYADLMNVLYDKDHYKL LGQ+NTAR+LID +
Sbjct: 13 PTAKDVHPFYADLMNVLYDKDHYKLALGQINTARNLIDKM 52
Score = 32.7 bits (71), Expect = 0.36
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 57 MSLYNFKKIAVVPTAKD 107
M+ YNFKKI VVPTAKD
Sbjct: 1 MAHYNFKKITVVPTAKD 17
Score = 25.8 bits (54), Expect(2) = 1e-15
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 446 RAALGRMATIMKRQGANLTYLNR 514
R + +M TIMKRQ +L YL +
Sbjct: 46 RNLIDKMCTIMKRQNQSLQYLEQ 68
>SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)
Length = 365
Score = 46.4 bits (105), Expect = 3e-05
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +1
Query: 565 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTGYKYLRWQVIDTPGILD 735
+ + GFP+VGKS+ + K+T+ Y FTT + G Y Q++D PGI++
Sbjct: 66 VALIGFPSVGKSTLLTKLTQTQSACASYEFTTLTCIPGVINYNGANIQLLDLPGIIE 122
>SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)
Length = 303
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +1
Query: 577 GFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTGYKYLRWQVIDTPGILD 735
GFP+VGKS+ + + EV Y FTT + G YK + Q++D PGI++
Sbjct: 55 GFPSVGKSTLLTNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIE 107
>SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)
Length = 255
Score = 37.5 bits (83), Expect = 0.013
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 577 GFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTGY 690
GFPN GKS+ + I+RA V Y FTT + VG Y
Sbjct: 2 GFPNAGKSTLLRAISRATPTVAAYPFTTLNPSVGMVEY 39
>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 34.3 bits (75), Expect = 0.12
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 562 TIIICGFPNVGKSSFINKITRA-DVEVQPYAFTTKSLYVGHTGYKYLRWQVIDTPGIL 732
T+ + GFPNVGKSS IN + R+ V TKS+ K+++ ++D+PGI+
Sbjct: 457 TVGVVGFPNVGKSSIINSLKRSRTCTVGATPGVTKSMQEVQLD-KHIK--LLDSPGIV 511
>SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)
Length = 141
Score = 33.9 bits (74), Expect = 0.16
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 565 IIICGFPNVGKSSFINKITRADVEVQPYAFTT 660
+ + GFP+VGKS+ + K+T+ Y FTT
Sbjct: 66 VALIGFPSVGKSTLLTKLTQTQSACASYEFTT 97
>SB_32162| Best HMM Match : Ras (HMM E-Value=4.7e-31)
Length = 357
Score = 32.7 bits (71), Expect = 0.36
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +1
Query: 565 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTGYKYLRWQVIDTPGILDH 738
+++ G NVGK+SF+ +T+ ++E P AF L + K+L + DT G ++
Sbjct: 9 VVLTGDNNVGKTSFLINLTQNELEGTPTAFANYELGLEVGSQKFL-LDLWDTEGTTEY 65
>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 32.7 bits (71), Expect = 0.36
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 571 ICGFPNVGKSSFINKITRADV-EVQPYAFTTKSLYVGHTGYKYLRWQVIDTPGILDHPLE 747
+ G+PNVGKSS IN + V +V P A TK V R ++D PG++ +P
Sbjct: 172 LIGYPNVGKSSIINTLKAKKVCKVAPIAGETK---VWQYITLMRRIYLVDCPGVV-YPTG 227
Query: 748 ETQ 756
+T+
Sbjct: 228 DTE 230
>SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07)
Length = 299
Score = 31.5 bits (68), Expect = 0.83
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 517 RQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRA-DVEVQPYAFTTKSL-YVGH 681
R +A LP D T TI + G+PNVGKSS IN I ++ V V TK YV H
Sbjct: 149 RNAVADLPE-DALT-TIGLVGYPNVGKSSTINTILQSKKVAVSSTPGRTKHFQYVCH 203
>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 472 HHETARS*SYIPEQVRQHLARLPSIDPYTRTI 567
H TAR S P Q H +LP +DP+ R+I
Sbjct: 521 HSSTARFYSPTPSQSILHACKLPILDPWDRSI 552
>SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)
Length = 879
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/49 (46%), Positives = 28/49 (57%)
Frame = +1
Query: 145 LLQSFTSIIKYQEYVGFILEK*NIPSRTSTTDCPELLGIPKVR*CPSIL 291
L++S+ IIK QE GFI EK PS S DC E +G P + SIL
Sbjct: 534 LMKSYDDIIKEQEARGFI-EK--APSTPSLNDCLE-VGSPYLADMGSIL 578
>SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1084
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +1
Query: 382 RKRLCETVKIWRFVVSVQTA-QTCGSGSHGHH--HETARS*SYIPEQVRQHLARLPSIDP 552
+K LCE I V++ A + G G++ H H + + PE R H +R+ ++
Sbjct: 133 KKLLCERDLILEKAVTIAKAMEQAGKGANAFHQAHTIPETGAQTPESARPHQSRVFKMEQ 192
Query: 553 YTRTIIICG 579
+ + CG
Sbjct: 193 TPQKCMSCG 201
>SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -2
Query: 741 WMIQDSRGVYHLPSQIFVTSMTNIQTLCGKRIWLHFHISTCYFINKT 601
W Q VY L + + +L K+ W+H +S C I+K+
Sbjct: 102 WQTQQEASVYKLYHLLLEIHRDDCASLLKKKYWVHPWLSLCGVISKS 148
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,839,968
Number of Sequences: 59808
Number of extensions: 562710
Number of successful extensions: 1181
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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