Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10412
(849 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 55 1e-08
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 48 1e-06
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 35 0.013
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 28 1.5
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 2.5
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 4.4
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 27 4.4
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 26 7.8
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 54.8 bits (126), Expect = 1e-08
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Frame = +2
Query: 257 KDGIIGKNDLRATFDSLGRLASEKELDEMVGE----ASGPINFTQLLTLFANRMSGGSDE 424
+DG I N+L SLG+ + EL +M+ E +G I+FT+ LT+ A +M +D
Sbjct: 25 QDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKMK-DTDN 83
Query: 425 DDVVINAFKTFDEEGK--IDSERLRHAL 502
++ V AFK FD++G I E L H L
Sbjct: 84 EEEVREAFKVFDKDGNGYITVEELTHVL 111
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 48.4 bits (110), Expect = 1e-06
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = +2
Query: 260 DGIIGKNDLRATFDSLGRLASEKELDEMVGEASGPINFTQLLTLFANRMSGGSDEDDVVI 439
DG IG+ D++ SL + ASE ++ M + PIN LT + + S +D ++
Sbjct: 62 DGNIGREDVKTMLTSLNQDASEDSINHMFESINPPINLAAFLTAMGSMLCRISPRND-LL 120
Query: 440 NAFKTFD--EEGKIDSERLRHAL 502
AF TFD + GKI +R AL
Sbjct: 121 EAFSTFDDTQSGKIPISTMRDAL 143
Score = 30.3 bits (65), Expect = 0.36
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 171 KRTGSNVFSMFSQKQVAEFKEAFQLMD 251
KR S F+ + Q+ E KEAF L+D
Sbjct: 32 KRASSGAFAQLTSSQIQELKEAFALLD 58
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 35.1 bits (77), Expect = 0.013
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 KDGIIGKNDLRATFDSLGRLASEKELDEMVGEASGPINFTQLLTLFANRMSGGSDEDDVV 436
KDG+I + + + SLG ++ EL ++ E I+ + ++ +N++ E++
Sbjct: 22 KDGLIPTSHVGSVLRSLGINVTDAELAKLSNELGDAIDEKKFMSFVSNKLRETESEEE-Y 80
Query: 437 INAFKTFDEE--GKIDSERLRHALMT 508
I AF+ FD++ G I++ + + T
Sbjct: 81 IKAFRVFDKDNSGYIETAKFADYMKT 106
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 263 GIIGKNDLRATFDSLGRLASEKELDEMV 346
G+IG +LR SLG S +E+DE++
Sbjct: 92 GMIGVGELRYVLTSLGEKLSNEEMDELL 119
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 2.5
Identities = 25/71 (35%), Positives = 33/71 (46%)
Frame = -1
Query: 444 ALITTSSSSEPPDMRLANRVKS*VKLMGPEASPTISSSSFSDASLPRESKVARKSFLPMM 265
A I S SS+PP R S V+ A ++S+ FS P ES + S LP +
Sbjct: 272 APIPFSVSSDPPSTM--GRSNSAVQSPSYFAHSLVNSTEFST---PNESLSSLPSILPSI 326
Query: 264 PSLCDPLAGMP 232
PSL A +P
Sbjct: 327 PSLESGKAELP 337
>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 231
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 339 SSSSFSDASLPRESKVARKSFLPMMPSLCDPLAGMP 232
SSSS S +S P + +RK P MP L L P
Sbjct: 3 SSSSSSGSSSPASKRSSRKRQTPPMPELPSFLLAFP 38
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 26.6 bits (56), Expect = 4.4
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -1
Query: 420 SEPPDMRLANRVK-S*VKL-MGPEASPTISSSSFSDASLPRESKVARKSFLPMMPS 259
S P R+A+ +K S VKL + P+A + SS+ S ASL ES R S P PS
Sbjct: 542 SRPRLPRVASPLKTSPVKLAVTPQAPSPLPSSNPSQASLTEESLSTRSS--PTKPS 595
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -1
Query: 354 ASPTISSSSFSDASLPRESKVARKSF-LPMMPS 259
+SP++ +++ + P++S V+RKSF P P+
Sbjct: 35 SSPSVPEGTYTVLNNPKQSTVSRKSFSAPTSPT 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,845
Number of Sequences: 5004
Number of extensions: 45348
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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