Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10411
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 40 0.002
02_02_0146 - 7171656-7172044,7172383-7175008 31 1.3
07_03_1165 - 24459156-24460139 27 3.0
01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648 29 3.1
06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849 29 4.1
06_03_0066 - 16145398-16145475,16145638-16145700,16146432-161465... 29 4.1
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 29 4.1
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447 29 4.1
12_02_0239 - 16125105-16126025,16126966-16127415 28 7.1
08_02_1602 - 28148255-28149413,28151927-28152087 28 7.1
02_03_0085 + 15063444-15063889,15064324-15065311 28 7.1
07_01_1023 + 8840754-8842988,8843189-8843362 28 9.4
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 303 CTKCKVRCPNETVLKEHIETIHKRASYVCP--ECNKEFVRRSHVTRHMTQSGCNGHQLNL 476
C +C LK+H+++ S++CP +C ++R+ H+ RHM + HQ L
Sbjct: 62 CQECGASFQKPAHLKQHMQSHSDERSFICPLEDCPFSYIRKDHLNRHMLK-----HQGKL 116
Query: 477 YPCEV 491
+ C +
Sbjct: 117 FTCSM 121
>02_02_0146 - 7171656-7172044,7172383-7175008
Length = 1004
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 480 DTNLTDDHYSHSVSYDEL-HENVLQILCCILGIHTKL 373
DTNL + S + +L H N++ +LCCI TKL
Sbjct: 735 DTNLDKEFESEVRTLGDLRHSNIVDLLCCISSQETKL 771
>07_03_1165 - 24459156-24460139
Length = 327
Score = 27.5 bits (58), Expect(2) = 3.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 369 KRASYVCPECNKEFVRRSHVTRHM 440
+ AS+ C CNKEF R V HM
Sbjct: 109 REASFPCHLCNKEFGSRKAVHGHM 132
Score = 20.6 bits (41), Expect(2) = 3.0
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +3
Query: 543 DPMCWPKQIATLLIPKSTMP 602
+PM P Q+A + P++ +P
Sbjct: 142 EPMSLPPQVAAPVHPQARLP 161
>01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648
Length = 487
Score = 29.5 bits (63), Expect = 3.1
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 5/148 (3%)
Frame = +3
Query: 24 PPGSKNKKLKSSNTDQPIDI----KQEVNSGRVYVCTMCKKSCDEDKWESHVEICRISSN 191
PP +K K+ N D ++ + + + YVC +C K D+ ++++ R N
Sbjct: 41 PPPAKKKRSLPGNPDPEAEVIALSPRTLMATNRYVCEICGKGFQRDQ---NLQLHRRGHN 97
Query: 192 IKVPTILLQRMWQEV*VQKELLQHVELNHSTLPNSVACTKCKVRCPNE-TVLKEHIETIH 368
+ P L QR +EV V+K++ P + R + T +K+H H
Sbjct: 98 L--PWKLKQRNPKEV-VRKKVY--------VCPEAGCVHHDPARALGDLTGIKKHFSRKH 146
Query: 369 KRASYVCPECNKEFVRRSHVTRHMTQSG 452
+ C +C+K + S H G
Sbjct: 147 GEKKWKCDKCSKRYAVHSDWKAHSKVCG 174
>06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849
Length = 489
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 291 NSVACTKCKVRCPNETVLKEHI 356
N + C +CKVRC N + +H+
Sbjct: 332 NYLWCDRCKVRCDNNVTMADHL 353
>06_03_0066 -
16145398-16145475,16145638-16145700,16146432-16146518,
16147168-16147246,16147359-16147478,16149289-16149440
Length = 192
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 258 QHVELNHSTLPNSVACT-KCKVRCPNETVLKEHIETIHKRASYVCPECNK 404
Q V+L H P VA T KC + VL+E T H +V EC K
Sbjct: 73 QFVQLLHEGRPVVVAFTIKCTYTQHLDKVLEEAAATFHPHVKFVRVECPK 122
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 342 LKEHIETIHKRASYVC--PECNKEFVRRSHVTRH 437
L++H +H Y+C P C K+FV S + RH
Sbjct: 104 LRKHAH-VHNERQYICQEPGCGKKFVDSSKLKRH 136
>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
Length = 420
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +3
Query: 342 LKEHIETIHK-RASYVCPECNKEFVRRSHVTRHMTQSGCNGH 464
+K+H H R +VC C K + +S H+ G GH
Sbjct: 117 IKKHFRRKHGGRRQWVCARCAKGYAVQSDYKAHLKTCGTRGH 158
>12_02_0239 - 16125105-16126025,16126966-16127415
Length = 456
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +3
Query: 201 PTILLQRMW-QEV*VQKELLQHVELNHSTLPN---SVACTKCKVRCPNETVLKEHIETIH 368
PT+L +W +E+ V L H+ H TL + S C V P E ++ E+
Sbjct: 192 PTVL--PVWDRELFVATSLSPHIIEEHQTLFDELESATCDDIMVTMPTENMVSEYFTISE 249
Query: 369 KRASYV 386
K+ SY+
Sbjct: 250 KQMSYL 255
>08_02_1602 - 28148255-28149413,28151927-28152087
Length = 439
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = +3
Query: 210 LLQRMWQEV*VQKELLQHVELNHSTLP---NSVACTKCKVRCPNETVLKEHIETIHKRAS 380
L+Q+ WQ Q QH +H+ P +S +T+++ + + +
Sbjct: 202 LMQQQWQ----QNGSRQHDYSSHAHAPPVFHSETAAPAGATSATDTIIELDAAELLAKYT 257
Query: 381 YVCPECNKEFVRRSHVTRHMTQSG 452
+ C C K F R +++ HM G
Sbjct: 258 HYCQVCGKGFKRDANLRMHMRAHG 281
>02_03_0085 + 15063444-15063889,15064324-15065311
Length = 477
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 288 PNSVACTKCKVRCPNETVLKEHIETIH 368
P + ACTKC CPN + + + H
Sbjct: 272 PPTPACTKCLTECPNNNLTWATVSSSH 298
>07_01_1023 + 8840754-8842988,8843189-8843362
Length = 802
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -3
Query: 149 VLITGLFTHCTNINSSRINFLFYIYWLI 66
+++TG FTH +I S +++ +F WL+
Sbjct: 775 IMLTGKFTHLQHIYSVKVDEVFCNKWLV 802
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,196,650
Number of Sequences: 37544
Number of extensions: 408073
Number of successful extensions: 1180
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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