Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10410
         (821 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23EC2 Cluster: Cyclin, N-terminal domain containing pr...    36   1.6  
UniRef50_Q1V0H5 Cluster: Type II Secretion; n=2; Candidatus Pela...    33   6.5  
UniRef50_Q4RNN1 Cluster: Chromosome 21 SCAF15012, whole genome s...    33   8.6  

>UniRef50_Q23EC2 Cluster: Cyclin, N-terminal domain containing
           protein; n=3; Eukaryota|Rep: Cyclin, N-terminal domain
           containing protein - Tetrahymena thermophila SB210
          Length = 2106

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -3

Query: 678 RYIVLLDFLENYISYTHR-FQICNDNMHYRTCARAKFNNFI*FTDNSQRDLYRETNLYTE 502
           +Y+  +D + NY SY+HR  +I   N  +     +  NN+  + +NS +      N  T 
Sbjct: 607 QYLTQIDQISNYNSYSHRQSRITRQNPDFNAAEVSDNNNYYGYQENSHKQYSNIYNFPTN 666

Query: 501 RKLNQQQRRNV 469
           + ++Q + + +
Sbjct: 667 QSISQNEFQKI 677


>UniRef50_Q1V0H5 Cluster: Type II Secretion; n=2; Candidatus
           Pelagibacter ubique|Rep: Type II Secretion - Candidatus
           Pelagibacter ubique HTCC1002
          Length = 1571

 Score = 33.5 bits (73), Expect = 6.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 555 FTDNSQRDLYRETNLYTERKLNQQQRRNVI 466
           FTDN+Q   +R  N Y   K +QQ RRN++
Sbjct: 842 FTDNNQEAYFRTINNYQAFKASQQSRRNIL 871


>UniRef50_Q4RNN1 Cluster: Chromosome 21 SCAF15012, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 21
           SCAF15012, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 597

 Score = 33.1 bits (72), Expect = 8.6
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = +3

Query: 591 FDSAYCRCK-FETYV---YMICSFRENLIKLCTYEKKKICI*DTLIYNKMQTD 737
           FDS+Y R + ++TYV   Y+I    + LI +C  EK+ I I   L Y +  T+
Sbjct: 312 FDSSYSRNRTYDTYVGLGYVIAGMDQGLIGVCVGEKRTITIPPHLAYGEEGTE 364


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 677,249,533
Number of Sequences: 1657284
Number of extensions: 12100175
Number of successful extensions: 22704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22688
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 70914189703
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)