Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10410
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    27   3.2  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    27   4.3  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    27   4.3  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   5.6  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   7.4  

>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 720 CRSKYPICKFFFFRRYIVLLDFLENYISYTHRFQICNDNMHYR 592
           CR+ Y IC+ F +R    L+   +N+I   HR      + H R
Sbjct: 72  CRNIYEICEAFGYRVEEHLVRTQDNFILCLHRITHPKQSQHKR 114


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -2

Query: 379 GTSLMTDSV-TPALLFDRSHRQISFK-KKSRHASLFLCLWLIVDLRIYN 239
           G S + D++ T   +F R +  + ++   S H  +FL LWLI+  ++ N
Sbjct: 756 GLSAIIDALKTSRQIFHRMYAYVVYRIALSLHLEIFLGLWLIIRNQLLN 804


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -2

Query: 379 GTSLMTDSV-TPALLFDRSHRQISFK-KKSRHASLFLCLWLIVDLRIYN 239
           G S + D++ T   +F R +  + ++   S H  +FL LWLI+  ++ N
Sbjct: 668 GLSAIIDALKTSRQIFHRMYSYVVYRIALSLHLEIFLGLWLIIRNQLLN 716


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 575 NLTISFNSPTTVNGIFTGK-QIC-IPNAS 495
           NLT++ NS  T +  FTG  QIC +PN S
Sbjct: 207 NLTLASNSQLTTSTKFTGLIQICKVPNES 235


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 567 NFI*FTDNSQRDLYRETNLYTERKLNQQQRRNVII 463
           N +  T +S RD+    N    + LN +QRRN ++
Sbjct: 318 NIMTTTQDSSRDVQLSLNNVQSQALNNRQRRNQLL 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,487
Number of Sequences: 5004
Number of extensions: 58418
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)