Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10410
         (821 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50197-1|AAA91254.1|  329|Caenorhabditis elegans Hypothetical pr...    31   1.00 
Z73102-18|CAI91178.1|   90|Caenorhabditis elegans Hypothetical p...    29   4.0  
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr...    28   7.0  
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical...    28   7.0  

>U50197-1|AAA91254.1|  329|Caenorhabditis elegans Hypothetical
           protein F25E2.1 protein.
          Length = 329

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 499 AFGIQICFPVKIPLTVVGELNEIVKFCTCTG---SIVHIVVANLKPMCI*YVV 648
           +FG  IC  V I L+ V  L+    + TC G   S++  +  +  P+CI Y++
Sbjct: 119 SFGTMICAIVPISLSRVLALSNASLYSTCFGGRRSLIFCIFLDFLPVCILYLI 171


>Z73102-18|CAI91178.1|   90|Caenorhabditis elegans Hypothetical
           protein B0035.18 protein.
          Length = 90

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 693 FFFFRRYIVLLDFLENYISYTHRFQICNDNMHY-RTCAR 580
           F+ + R+    +F  NY SYT   +IC+ N  Y  TC +
Sbjct: 36  FYVWPRHNKYEEFFANYDSYTRMKEICSANKGYMHTCPK 74


>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
            translation initiationfactor eIF5B protein.
          Length = 1074

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 346  ALLFDRSHRQISFKKKSRHASLFLCLWLIVDLRIYNTRNP 227
            A L  R   +   ++ + H ++F C   ++   +YNTRNP
Sbjct: 922  AFLKYREELKEKARRDNEHLAIFPCKLRVLPNHVYNTRNP 961


>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
            protein Y54F10BM.2 protein.
          Length = 1173

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 346  ALLFDRSHRQISFKKKSRHASLFLCLWLIVDLRIYNTRNP 227
            A L  R   +   ++ + H ++F C   ++   +YNTRNP
Sbjct: 1021 AFLKYREELKEKARRDNEHLAIFPCKLRVLPNHVYNTRNP 1060


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,647,191
Number of Sequences: 27780
Number of extensions: 323479
Number of successful extensions: 619
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)