Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10408
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    28   0.87 
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    25   6.1  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    25   8.1  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 320 KDDSRNLGRFYDSGAEDISS--SGSDCSTGTRGEERTDHALR 439
           K+D+ +  +  DSG  D     SG+D S    GEE++  AL+
Sbjct: 786 KEDASSTKQAKDSGTNDFDKLISGNDVSKNNSGEEQSRSALK 827


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 140 KNWLANTSWSSSLASCDPWTKIKS 69
           + W+ N+S S  L  CD   KI+S
Sbjct: 187 EKWMKNSSISEYLQECDSMAKIES 210


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 130 SQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKIQS 264
           S  +H+ SLP  SS   +     +  YLV+T   + +V  T I S
Sbjct: 121 SSRYHSVSLPCWSSGTGLAGLFGASSYLVMTTWFNFSVRSTLIIS 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,676,771
Number of Sequences: 5004
Number of extensions: 27901
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)