Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10408
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990...    29   2.0  
03_03_0216 + 15495395-15495566,15495648-15495733,15495824-154958...    29   2.7  
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804     29   3.6  
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602...    29   3.6  
05_03_0501 + 14744913-14745107,14745545-14745571,14746002-147460...    28   6.2  
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442...    27   8.2  
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506...    27   8.2  

>04_04_0596 -
           26497863-26497913,26498010-26498081,26499015-26499093,
           26499440-26499553,26499822-26499871,26500353-26500398,
           26501100-26501719
          Length = 343

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +2

Query: 281 RDWRSVQEGRACRKDDSRNLGRFYDSGAEDIS-SSGSDCSTGTRGEERTDHALRTR*SDR 457
           R  R  ++ R  R+  SR+      S +E  S SS SDCS G+  E  ++   R R   R
Sbjct: 79  RKRRRKEKERRHRRRRSRSASSGSSSESESESESSYSDCSAGSESETDSEEERRRRRRRR 138

Query: 458 KRQRDPTRKR 487
           +R+     +R
Sbjct: 139 RRKEREEEER 148


>03_03_0216 +
           15495395-15495566,15495648-15495733,15495824-15495874,
           15496005-15496390,15496760-15496898,15497540-15497595,
           15497712-15497782,15497876-15498081
          Length = 388

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 287 WRSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTG 403
           WR +   +A    D   LG+ Y   +E++S+S SDC +G
Sbjct: 2   WRFLGASKALTSSDVWFLGKCYKLSSEELSNS-SDCESG 39


>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
          Length = 1209

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
 Frame = -2

Query: 405 VPVLQSLPLELMSSAPES*K----RPRFLLSSFLQARPS-CTERQSR 280
           V VLQS+P +  SS+P S K     P F+ SS  ++R S C  ++ R
Sbjct: 256 VVVLQSVPTQQQSSSPSSSKLRADAPEFIPSSIKKSRASRCKAKKKR 302


>03_05_0136 +
           21158917-21159939,21160183-21160241,21160259-21160294,
           21160345-21160387,21160582-21160698,21162090-21162179,
           21162329-21162436,21162547-21162588
          Length = 505

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +2

Query: 344 RFYDSGAEDISSSGSDCSTGTRG 412
           R  D+GA D++SSGS+CS  +RG
Sbjct: 176 RRLDAGA-DVASSGSECSDASRG 197


>05_03_0501 +
           14744913-14745107,14745545-14745571,14746002-14746097,
           14746479-14746769
          Length = 202

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 299 QEGRACRKDDSRNLGRFYDSGAED---ISSSGSDCSTGTRGEERTDHALRTR*SDRKRQ 466
           ++G    K D R++G   D GA     +SSSG   +TG  G+ + + A     +D++ Q
Sbjct: 57  EKGEKLTKKDIRSIGIGMDLGAASAVAVSSSGGRRATGEIGQRQVESAGELGLTDKQLQ 115


>12_01_1111 +
           11842837-11843094,11843142-11843255,11843267-11844247,
           11861747-11862025,11862998-11863098,11863723-11863792,
           11863947-11863974,11864057-11864114,11864440-11864536
          Length = 661

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -2

Query: 405 VPVLQSLPLELMSSAPES*K----RPRFLLSSFLQARPSCTERQSRQ*VQ 268
           V VLQS+P +  SS+P S K     P F+ SS  ++R S    + ++ +Q
Sbjct: 241 VVVLQSVPTQQQSSSPSSSKLRADAPEFIPSSIKKSRASRRRAKKKRTLQ 290


>04_04_0964 -
           29749624-29749649,29749742-29749945,29750036-29750634,
           29750742-29750826,29750914-29751562,29751568-29751643,
           29753891-29753957,29754097-29754998,29756579-29756790
          Length = 939

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 115 HDVFASQFFHTYSLPVNSSAADVTAELTSD 204
           HD F   + H  S+P+    A V AE++ D
Sbjct: 809 HDSFLRSYLHLTSMPLPCEGAAVPAEISKD 838


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,636,610
Number of Sequences: 37544
Number of extensions: 181207
Number of successful extensions: 629
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)