Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10408
(583 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical ... 38 0.004
M14334-2|AAA28071.1| 145|Caenorhabditis elegans protein ( C.ele... 34 0.085
AC006774-1|AAF60615.1| 145|Caenorhabditis elegans Heat shock pr... 34 0.085
L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock pro... 31 0.45
Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 2.4
U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock prot... 29 2.4
U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock prot... 29 2.4
U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock prot... 29 2.4
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 29 3.2
U00043-5|AAN65292.1| 505|Caenorhabditis elegans Hypothetical pr... 28 4.2
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z50858-5|CAA90722.1| 534|Caenorhabditis elegans Hypothetical pr... 27 7.4
U13074-1|AAA96982.1| 534|Caenorhabditis elegans steroid hormone... 27 7.4
AF273840-1|AAG15187.1| 553|Caenorhabditis elegans sex-1 protein. 27 7.4
AF049869-1|AAC77795.1| 556|Caenorhabditis elegans SEX-1 protein. 27 7.4
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical pr... 27 9.7
U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone... 27 9.7
AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear recep... 27 9.7
AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear recep... 27 9.7
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 27 9.7
AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear recep... 27 9.7
>AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical
protein Y55F3BR.6 protein.
Length = 180
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +1
Query: 76 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 237
I V+GS KED + S F + LP + V ++LT+DG+L + A E
Sbjct: 104 IIVEGSHGEKEDTYGTIESTFKRRFPLPKAVAPESVQSQLTADGHLTIDAKAPE 157
>M14334-2|AAA28071.1| 145|Caenorhabditis elegans protein (
C.elegans heat shockprotein genes 16-41 and 16-2,
complete cds, flanked byCeRep16 repetitive elements. ).
Length = 145
Score = 33.9 bits (74), Expect = 0.085
Identities = 21/64 (32%), Positives = 27/64 (42%)
Frame = +1
Query: 67 GDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVD 246
G + +QG QE K D H F LP + V + L+ DG L + AP E V
Sbjct: 70 GRTLSIQGEQELKTD-HGYSKKSFSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAVQ 128
Query: 247 KTKI 258
I
Sbjct: 129 GRSI 132
>AC006774-1|AAF60615.1| 145|Caenorhabditis elegans Heat shock
protein protein 16.2 protein.
Length = 145
Score = 33.9 bits (74), Expect = 0.085
Identities = 21/64 (32%), Positives = 27/64 (42%)
Frame = +1
Query: 67 GDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVD 246
G + +QG QE K D H F LP + V + L+ DG L + AP E V
Sbjct: 70 GRTLSIQGEQELKTD-HGYSKKSFSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAVQ 128
Query: 247 KTKI 258
I
Sbjct: 129 GRSI 132
>L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock
protein protein 12.2 protein.
Length = 110
Score = 31.5 bits (68), Expect = 0.45
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 67 GDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA 225
G + + E + D+H A + Y LP + + V + L + G L +TA
Sbjct: 54 GQELLIHCRHETRSDNHGTVAREINRAYKLPDDVDVSTVKSHLATRGVLTITA 106
>Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical
protein C16C10.3 protein.
Length = 1032
Score = 29.1 bits (62), Expect = 2.4
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +2
Query: 257 YRARCTYCRDWRSVQEGRACR---KDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTD 427
YR + RD+R V R +D+SR YDS + SS+G+D S E +
Sbjct: 324 YRGGRSDSRDFRGVYGNRGGNDRYRDESRGRRDMYDSRRDSGSSNGADYSPSDAAE--LE 381
Query: 428 HALRTR 445
HA R
Sbjct: 382 HAFGER 387
>U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock protein
protein 25,isoform c protein.
Length = 108
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 76 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 237
+ V E K VF ++ + LP ++ +++ L++DG L V AP+ +
Sbjct: 51 LLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 103
>U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock protein
protein 25,isoform b protein.
Length = 205
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 76 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 237
+ V E K VF ++ + LP ++ +++ L++DG L V AP+ +
Sbjct: 148 LLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 200
>U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock protein
protein 25,isoform a protein.
Length = 219
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 76 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 237
+ V E K VF ++ + LP ++ +++ L++DG L V AP+ +
Sbjct: 162 LLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 214
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical
protein C06B8.7 protein.
Length = 3118
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 203 MDTSS*RRRSAKMLIKRKYRARCTYCRDWRSVQEGRACR 319
+D + R+ ++ + ++R+ CT +W S+ G ACR
Sbjct: 130 VDGPTVRQGRLQVQFRDRWRSVCTMVTNWTSIDTGTACR 168
>U00043-5|AAN65292.1| 505|Caenorhabditis elegans Hypothetical
protein T26A5.5b protein.
Length = 505
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 560 TYKKIFY*ILISL-NAYTNYHLSRNFVSVWDHVV 462
T+ K+ L+S+ N YT++H+ + SVW HV+
Sbjct: 142 TFPKVQNYCLMSVANCYTDFHIDFSGTSVWYHVL 175
>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical
protein T26A5.5a protein.
Length = 1076
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 560 TYKKIFY*ILISL-NAYTNYHLSRNFVSVWDHVV 462
T+ K+ L+S+ N YT++H+ + SVW HV+
Sbjct: 142 TFPKVQNYCLMSVANCYTDFHIDFSGTSVWYHVL 175
>Z50858-5|CAA90722.1| 534|Caenorhabditis elegans Hypothetical
protein F44A6.2 protein.
Length = 534
Score = 27.5 bits (58), Expect = 7.4
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +2
Query: 245 IKRKYRARCTYCRDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSG---SDCSTGTRGE 415
IKR+ R RC YCR + + G + KD R + +F ++ +D S + ST R E
Sbjct: 195 IKRESRNRCQYCRFKKCLDSGMS--KDSVRQM-KFRNAMRDDKSPDSVFVPEISTLERQE 251
Query: 416 E 418
E
Sbjct: 252 E 252
>U13074-1|AAA96982.1| 534|Caenorhabditis elegans steroid hormone
receptor familymember CNR14 protein.
Length = 534
Score = 27.5 bits (58), Expect = 7.4
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +2
Query: 245 IKRKYRARCTYCRDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSG---SDCSTGTRGE 415
IKR+ R RC YCR + + G + KD R + +F ++ +D S + ST R E
Sbjct: 195 IKRESRNRCQYCRFKKCLDSGMS--KDSVRQM-KFRNAMRDDKSPDSVFVPEISTLERQE 251
Query: 416 E 418
E
Sbjct: 252 E 252
>AF273840-1|AAG15187.1| 553|Caenorhabditis elegans sex-1 protein.
Length = 553
Score = 27.5 bits (58), Expect = 7.4
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +2
Query: 245 IKRKYRARCTYCRDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSG---SDCSTGTRGE 415
IKR+ R RC YCR + + G + KD R + +F ++ +D S + ST R E
Sbjct: 192 IKRESRNRCQYCRFKKCLDSGMS--KDSVRQM-KFRNAMRDDKSPDSVFVPEISTLERQE 248
Query: 416 E 418
E
Sbjct: 249 E 249
>AF049869-1|AAC77795.1| 556|Caenorhabditis elegans SEX-1 protein.
Length = 556
Score = 27.5 bits (58), Expect = 7.4
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +2
Query: 245 IKRKYRARCTYCRDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSG---SDCSTGTRGE 415
IKR+ R RC YCR + + G + KD R + +F ++ +D S + ST R E
Sbjct: 195 IKRESRNRCQYCRFKKCLDSGMS--KDSVRQM-KFRNAMRDDKSPDSVFVPEISTLERQE 251
Query: 416 E 418
E
Sbjct: 252 E 252
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 27.1 bits (57), Expect = 9.7
Identities = 23/80 (28%), Positives = 36/80 (45%)
Frame = +2
Query: 248 KRKYRARCTYCRDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTD 427
+R+ R+R + RD R + + R+ SR+ R S + D D R R
Sbjct: 414 RRRSRSR-SRTRDRRRPRRSNSRRRSRSRDRQR--RSRSRDRRRYSPDRRERRRSRSRDR 470
Query: 428 HALRTR*SDRKRQRDPTRKR 487
R+R + R+RQR R+R
Sbjct: 471 RRHRSRSTSRRRQRSKDRRR 490
>Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical
protein C48D5.1 protein.
Length = 619
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 245 IKRKYRARCTYCRDWRSVQEG 307
I ++YR+RC YCR + ++ G
Sbjct: 312 IDKRYRSRCQYCRYQKCLEVG 332
>U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone
receptor familymember CNR8 protein.
Length = 463
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 245 IKRKYRARCTYCRDWRSVQEG 307
I ++YR+RC YCR + ++ G
Sbjct: 156 IDKRYRSRCQYCRYQKCLEVG 176
>AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 245 IKRKYRARCTYCRDWRSVQEG 307
I ++YR+RC YCR + ++ G
Sbjct: 312 IDKRYRSRCQYCRYQKCLEVG 332
>AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 469
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 245 IKRKYRARCTYCRDWRSVQEG 307
I ++YR+RC YCR + ++ G
Sbjct: 162 IDKRYRSRCQYCRYQKCLEVG 182
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 224 RRSAKML-IKRKYRARCTYCRDWRSVQEGRACRKDDSRNLGRFYDSGAEDISS 379
R++ K++ + R+++ +C YC++ + R C+K + Y+ A I+S
Sbjct: 560 RKTVKLIQVDRRFKGQCHYCKNVGHM--ARNCKKKAFAEKRKGYEDQARSITS 610
>AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 245 IKRKYRARCTYCRDWRSVQEG 307
I ++YR+RC YCR + ++ G
Sbjct: 312 IDKRYRSRCQYCRYQKCLEVG 332
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,222,380
Number of Sequences: 27780
Number of extensions: 154126
Number of successful extensions: 633
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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