Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10408
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.54 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.54 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.3  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +2

Query: 224 RRSAKMLIKRKYRARCTYCRDWRSVQEG--RACRKDDSRNLGRFYDSGAEDISSSGSD 391
           R     +I ++ R RC YCR  + +  G  R   +++ +       S  E  SS  SD
Sbjct: 147 REEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSD 204


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +2

Query: 224 RRSAKMLIKRKYRARCTYCRDWRSVQEG--RACRKDDSRNLGRFYDSGAEDISSSGSD 391
           R     +I ++ R RC YCR  + +  G  R   +++ +       S  E  SS  SD
Sbjct: 147 REEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSD 204


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
 Frame = -3

Query: 269 NALCIFVLSTFSLIGAVTTRYPSEVSSA---VTSAALEFTGRL*VWKNWLANTSWSSSLA 99
           N L I  +   S +  VT  +   ++ A   V  A L F+    V+K W+    W S   
Sbjct: 83  NVLVILAVYHTSKLRNVTNMFIVSLAVADLMVGLAVLPFSATWEVFKVWIFGDLWCSIWL 142

Query: 98  SCDPW 84
           + D W
Sbjct: 143 AVDVW 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,552
Number of Sequences: 438
Number of extensions: 1768
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)