Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10408
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53800.1 68418.m06685 expressed protein                             33   0.18 
At5g64670.1 68418.m08127 ribosomal protein L15 family protein          30   1.3  
At3g23670.1 68416.m02976 phragmoplast-associated kinesin-related...    28   5.2  
At2g47670.1 68415.m05953 invertase/pectin methylesterase inhibit...    28   5.2  
At1g76050.2 68414.m08832 pseudouridine synthase family protein c...    28   5.2  
At1g76050.1 68414.m08831 pseudouridine synthase family protein c...    28   5.2  
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea...    28   5.2  
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea...    28   5.2  
At3g11310.1 68416.m01375 hypothetical protein                          27   6.9  

>At5g53800.1 68418.m06685 expressed protein
          Length = 351

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +2

Query: 317 RKDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKRSFC 496
           R++  R      DSG+E    SGS+     R   R D   R   SDRK  R   R+R + 
Sbjct: 47  RRESKRRTKDGNDSGSESGLESGSESEKEERRRSRKDRGKRK--SDRKSSRSRRRRRDYS 104

Query: 497 LSDN 508
            S +
Sbjct: 105 SSSS 108


>At5g64670.1 68418.m08127 ribosomal protein L15 family protein
          Length = 281

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 399 VLQSLPLELMSSAPES*KRPRFLLSS-FLQARPSCTERQSRQ*VQRALYFRFINIFA 232
           +L  +   L++S+     +PRF++SS  LQ RPS    Q      RAL F+ I  ++
Sbjct: 6   LLSIISTSLINSSFHQTAKPRFIISSPLLQCRPSPISTQIPTSTSRALSFQGIRAYS 62


>At3g23670.1 68416.m02976 phragmoplast-associated kinesin-related
           protein, putative similar to kinesin like protein
           GB:CAB10194 from [Arabidopsis thaliana]
          Length = 1313

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 320 KDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTDHAL 436
           KD+S N      S A D++   + C T   G E TD+AL
Sbjct: 555 KDESYNNSHLKSSEATDVNMEDACCQTENNGSE-TDNAL 592


>At2g47670.1 68415.m05953 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Lycopersicon esculentum SP|Q43143, Arabidopsis thaliana
           SP|Q42534; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 208

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 299 VRSASLDNRYNALCIFVLSTFSLIGAVTTRYPSEVSSAVT 180
           VR+A    RYN LC+  L  F+++    T   +  S AVT
Sbjct: 49  VRNACNVTRYNRLCVRTLWPFAIVARNNTSKWARASVAVT 88


>At1g76050.2 68414.m08832 pseudouridine synthase family protein
           contains Pfam profiles: PF00849 RNA pseudouridylate
           synthase, PF01479: S4 domain
          Length = 430

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 23/66 (34%), Positives = 35/66 (53%)
 Frame = -3

Query: 263 LCIFVLSTFSLIGAVTTRYPSEVSSAVTSAALEFTGRL*VWKNWLANTSWSSSLASCDPW 84
           L I  L +FSL  A + RYPS  SS++ S    F  ++    N++  +S   +L +C P 
Sbjct: 2   LSISQLPSFSLTTAKSLRYPSSPSSSL-SIFFSFFPKV---SNFVRASSGIPNLVACSP- 56

Query: 83  TKIKSP 66
           T+I  P
Sbjct: 57  TEIIIP 62


>At1g76050.1 68414.m08831 pseudouridine synthase family protein
           contains Pfam profiles: PF00849 RNA pseudouridylate
           synthase, PF01479: S4 domain
          Length = 313

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 23/66 (34%), Positives = 35/66 (53%)
 Frame = -3

Query: 263 LCIFVLSTFSLIGAVTTRYPSEVSSAVTSAALEFTGRL*VWKNWLANTSWSSSLASCDPW 84
           L I  L +FSL  A + RYPS  SS++ S    F  ++    N++  +S   +L +C P 
Sbjct: 2   LSISQLPSFSLTTAKSLRYPSSPSSSL-SIFFSFFPKV---SNFVRASSGIPNLVACSP- 56

Query: 83  TKIKSP 66
           T+I  P
Sbjct: 57  TEIIIP 62


>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 793

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 221 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 135
           V  R PSE++S++ +A L  T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564


>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 790

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 221 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 135
           V  R PSE++S++ +A L  T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564


>At3g11310.1 68416.m01375 hypothetical protein
          Length = 539

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 82  VQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELT-SDG 207
           V GS+   +DDH +     F +   P +SS  D+   +T S+G
Sbjct: 339 VPGSEGGADDDHHIVMDHHFESPHDPASSSEIDLNEPVTGSEG 381


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,656,031
Number of Sequences: 28952
Number of extensions: 145101
Number of successful extensions: 473
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)