Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10407
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    97   3e-21
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    95   7e-21
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    30   0.28 
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    29   0.50 
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    29   0.50 
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    29   0.87 
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb...    26   4.6  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   6.1  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   8.1  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 96.7 bits (230), Expect = 3e-21
 Identities = 47/84 (55%), Positives = 63/84 (75%)
 Frame = +3

Query: 6   RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLC 185
           + VG TLVNRT G K A++ LKGR+ EVSLADLQ D   E SFRK +L  E +QG++ L 
Sbjct: 41  KNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLT 98

Query: 186 NFHGMDLTTDKLRWMVKKWQTLIK 257
           +F+G D+T+DKLR +V+KWQ+ I+
Sbjct: 99  SFNGFDMTSDKLRSLVRKWQSTIE 122



 Score = 89.4 bits (212), Expect = 4e-19
 Identities = 41/91 (45%), Positives = 60/91 (65%)
 Frame = +2

Query: 236 KMADSHQANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRD 415
           K   + +AN  +KTTDGY+ R+F IGFT++     +KT YAQ +Q+RAI +KM ++I   
Sbjct: 116 KWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQ 175

Query: 416 VTNSELREVVNKLIPDSIAKDIEKACHGIYP 508
                ++E+V KLIP+ I + IEKA + IYP
Sbjct: 176 ANGCSMKELVQKLIPEVIGRAIEKATNNIYP 206



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +1

Query: 505 PLRDVCIRKVKVLKRPRFEISKLMELH 585
           PL++V +RKVK+LK P+ +  KL+ELH
Sbjct: 206 PLQNVFVRKVKILKAPKHDAQKLLELH 232


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 95.5 bits (227), Expect = 7e-21
 Identities = 46/84 (54%), Positives = 63/84 (75%)
 Frame = +3

Query: 6   RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLC 185
           + VG TLVNRT G K A++ LKGR+ EVSLADLQ D   E +FRK +L  E +QG++ L 
Sbjct: 41  KNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLT 98

Query: 186 NFHGMDLTTDKLRWMVKKWQTLIK 257
           +F+G+ +T+DKLR +V+KWQT I+
Sbjct: 99  SFNGLSITSDKLRSLVRKWQTTIE 122



 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 40/85 (47%), Positives = 61/85 (71%)
 Frame = +2

Query: 254 QANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSEL 433
           +A+  +KTTDGY+ RVF IGFT + +   +KT YAQ +Q+RAIR+KM ++I    ++  +
Sbjct: 122 EADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSM 181

Query: 434 REVVNKLIPDSIAKDIEKACHGIYP 508
           RE+V KLIP+ I ++IE+A   I+P
Sbjct: 182 RELVQKLIPEVIGREIERATGSIFP 206



 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +1

Query: 505 PLRDVCIRKVKVLKRPRFEISKLMELH 585
           PL++V +RKVK+LK P+ +  KL+ELH
Sbjct: 206 PLQNVLVRKVKILKAPKHDAQKLLELH 232


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -3

Query: 286 SIGCLHINVGLMRVCHFLTIHLSLSVVRSMPWKLQSTLRPC-TYSAINLNLRKDLSASVS 110
           S G     V   R+CHFL I + L V+    +   S L  C TYSA+   L + +S+ V+
Sbjct: 534 SFGSNSFTVWEDRLCHFLIITIGL-VMFCKCFSEMSPLFACSTYSALAFILLQVISSYVT 592

Query: 109 ACR 101
            CR
Sbjct: 593 NCR 595


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +3

Query: 21  TLVNRTQG-TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHG 197
           T VN+    TK+A    KG   +V++  L+   DAE + + F  I EY++  N       
Sbjct: 82  TSVNKANMLTKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFP 137

Query: 198 MDLTTDKLRWMVKKWQTLIKP 260
            D T  K    + +W ++ +P
Sbjct: 138 KDKTQGK---FINEWDSIFEP 155


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = -3

Query: 577 PSTSRSRNGASSTLSPFGCKHRARVD 500
           PSTSR RN   S LS    KHRA+ D
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAKDD 761


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 275 SSHQ-CWLDESL-PFFNHPPELIGCEVHAVEVAEHITS 168
           S+HQ C +  SL     H PEL+ C     +VA+H+TS
Sbjct: 169 STHQYCEMVRSLLQSMGHSPELVQCITCLPDVADHLTS 206


>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 202

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 507 LARCLHPKGESVEEAPFRDLEVD 575
           ++RCL    ++V+EA  RDLE++
Sbjct: 21  ISRCLGFAAQNVDEANLRDLEIE 43


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +1

Query: 304  LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 396
            LHW+    L+  +Q +  P H+GQ  S  + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +2

Query: 311 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE 439
           G T +DS+ ++    A H + R +++K  E ++ D +N  +++
Sbjct: 7   GITQEDSIEKKSKNVASHGEKRKVKRKK-EDLSMDGSNDGVKD 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,007
Number of Sequences: 5004
Number of extensions: 56884
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)