Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10407
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 120 2e-27
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 119 2e-27
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 119 3e-27
10_01_0304 - 3356541-3357518 29 3.6
09_04_0689 - 19480409-19480599,19480780-19480889,19481032-194811... 28 8.4
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236... 28 8.4
02_04_0231 + 21117887-21117935,21118710-21118825,21119049-211191... 28 8.4
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 120 bits (288), Expect = 2e-27
Identities = 62/84 (73%), Positives = 69/84 (82%)
Frame = +3
Query: 6 RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLC 185
R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQGRNVL
Sbjct: 41 RNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQGRNVLT 98
Query: 186 NFHGMDLTTDKLRWMVKKWQTLIK 257
NF GM TTDKLR +VKKWQTLI+
Sbjct: 99 NFWGMSFTTDKLRSLVKKWQTLIE 122
Score = 99.5 bits (237), Expect = 2e-21
Identities = 42/85 (49%), Positives = 63/85 (74%)
Frame = +2
Query: 254 QANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSEL 433
+A++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ + +L
Sbjct: 122 EAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDL 181
Query: 434 REVVNKLIPDSIAKDIEKACHGIYP 508
+E+V+K IP+ I K+IEK+ I+P
Sbjct: 182 KELVSKFIPEVIGKEIEKSTSSIFP 206
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/27 (62%), Positives = 24/27 (88%)
Frame = +1
Query: 505 PLRDVCIRKVKVLKRPRFEISKLMELH 585
PL++V IRKVK+LK P+F++ KLME+H
Sbjct: 206 PLQNVFIRKVKILKAPKFDLGKLMEVH 232
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 119 bits (287), Expect = 2e-27
Identities = 62/84 (73%), Positives = 69/84 (82%)
Frame = +3
Query: 6 RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLC 185
R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL
Sbjct: 41 RNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLT 98
Query: 186 NFHGMDLTTDKLRWMVKKWQTLIK 257
NF GM TTDKLR +VKKWQTLI+
Sbjct: 99 NFWGMSFTTDKLRSLVKKWQTLIE 122
Score = 101 bits (241), Expect = 7e-22
Identities = 43/85 (50%), Positives = 64/85 (75%)
Frame = +2
Query: 254 QANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSEL 433
+A++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L
Sbjct: 122 EAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDL 181
Query: 434 REVVNKLIPDSIAKDIEKACHGIYP 508
+E+V+K IP+ I K+IEKA I+P
Sbjct: 182 KELVSKFIPEVIGKEIEKATSSIFP 206
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/27 (59%), Positives = 24/27 (88%)
Frame = +1
Query: 505 PLRDVCIRKVKVLKRPRFEISKLMELH 585
PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 206 PLQNVFVRKVKILKAPKFDLGKLMEVH 232
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 119 bits (286), Expect = 3e-27
Identities = 61/84 (72%), Positives = 69/84 (82%)
Frame = +3
Query: 6 RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLC 185
R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL
Sbjct: 41 RNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLT 98
Query: 186 NFHGMDLTTDKLRWMVKKWQTLIK 257
NF GM TTDKLR +VKKWQTLI+
Sbjct: 99 NFWGMSFTTDKLRSLVKKWQTLIE 122
Score = 103 bits (247), Expect = 1e-22
Identities = 44/85 (51%), Positives = 65/85 (76%)
Frame = +2
Query: 254 QANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSEL 433
+A++DVKTTDGY+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L
Sbjct: 122 EAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDL 181
Query: 434 REVVNKLIPDSIAKDIEKACHGIYP 508
+E+V+K IP+ I K+IEKA I+P
Sbjct: 182 KELVSKFIPEVIGKEIEKATSSIFP 206
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/27 (59%), Positives = 24/27 (88%)
Frame = +1
Query: 505 PLRDVCIRKVKVLKRPRFEISKLMELH 585
PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 206 PLQNVFVRKVKILKAPKFDLGKLMEVH 232
>10_01_0304 - 3356541-3357518
Length = 325
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/83 (28%), Positives = 35/83 (42%)
Frame = -1
Query: 303 KTRRTYPSVVFTSMLA**ESAIF*PST*AYRL*GPCRGSCRAHYVLAHIRRLI*ICGKTF 124
+ RRT V ++ E F P+ A RL C+ +CR H + I+ ++ KT
Sbjct: 61 RDRRTGKVVALKRLIGADEGGRFAPNFDALRLEAACQHACRGHPNIVQIKDVV-ADAKTG 119
Query: 123 PRQCQLVDQPGKLRKLFPSILPK 55
L G LR FP P+
Sbjct: 120 DLFLVLEFVGGSLRDEFPRARPE 142
>09_04_0689 -
19480409-19480599,19480780-19480889,19481032-19481117,
19481410-19481523,19481697-19482066,19482216-19482346,
19482628-19482736,19482901-19483022,19483113-19483219,
19483447-19483551,19483654-19483812,19484071-19484126,
19484200-19484251,19486724-19486821,19487086-19487210
Length = 644
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -1
Query: 672 LNTLLNGRLVALRPFRLVSGFPLASTAFAVKFHQLRDLETGPL 544
L+TL +G++V R +SG P A V +H L E GPL
Sbjct: 366 LSTLPDGKIV-----RGLSGLPKQGPAVIVGYHMLLGFELGPL 403
>04_03_0983 +
21423086-21423280,21423330-21423404,21423531-21423632,
21423721-21423774,21423880-21423972,21424526-21424618,
21427329-21427433,21427517-21427615,21427701-21427997,
21428512-21428622
Length = 407
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 223 LSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETSK 80
+++ +R+ PW L++ R T +A + +KD SA + +S E K
Sbjct: 274 ITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMK 321
>02_04_0231 +
21117887-21117935,21118710-21118825,21119049-21119144,
21119276-21119332,21119547-21119699,21119801-21119885,
21120022-21120139,21120278-21120442,21120795-21120914,
21121006-21121081,21121247-21121418,21121574-21122049,
21122130-21122320,21124348-21124583,21125799-21125959
Length = 756
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -2
Query: 299 HVERIHRLSSHQCWLDESLPFFNHPPELIGCEVHAVEVAEHITSLHIF 156
H+E++ + Q LD+ LP FN P +++ C+V VE+ S ++
Sbjct: 52 HMEQLEASTDQQ--LDQHLPLFNLPSKIL-CKVVNVELRAETDSDEVY 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,992,857
Number of Sequences: 37544
Number of extensions: 404515
Number of successful extensions: 1279
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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