Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10407
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   125   3e-29
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           120   1e-27
At2g46530.1 68415.m05802 transcriptional factor B3 family protei...    30   1.7  
At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein ...    27   9.3  
At2g21630.1 68415.m02573 transport protein, putative similar to ...    27   9.3  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  125 bits (301), Expect = 3e-29
 Identities = 64/84 (76%), Positives = 69/84 (82%)
 Frame = +3

Query: 6   RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLC 185
           R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D   ++RK RL AE VQGRNVLC
Sbjct: 41  RNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDED--NAYRKIRLRAEDVQGRNVLC 98

Query: 186 NFHGMDLTTDKLRWMVKKWQTLIK 257
            F GMD TTDKLR +VKKWQTLI+
Sbjct: 99  QFWGMDFTTDKLRSLVKKWQTLIE 122



 Score =  102 bits (244), Expect = 3e-22
 Identities = 42/85 (49%), Positives = 66/85 (77%)
 Frame = +2

Query: 254 QANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSEL 433
           +A++DVKTTD Y LR+FCI FT + +   ++TCYAQ +Q+R IR+KM +I+ R+ ++ +L
Sbjct: 122 EAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDL 181

Query: 434 REVVNKLIPDSIAKDIEKACHGIYP 508
           +++V K IP++I ++IEKA  GIYP
Sbjct: 182 KDLVAKFIPEAIGREIEKATQGIYP 206



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 16/27 (59%), Positives = 24/27 (88%)
 Frame = +1

Query: 505 PLRDVCIRKVKVLKRPRFEISKLMELH 585
           PL++V IRKVK+LK P+F++ KLM++H
Sbjct: 206 PLQNVFIRKVKILKAPKFDLGKLMDVH 232


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  120 bits (289), Expect = 1e-27
 Identities = 63/84 (75%), Positives = 68/84 (80%)
 Frame = +3

Query: 6   RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLC 185
           R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D   ++RK RL AE VQGRNVL 
Sbjct: 41  RNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--NAYRKIRLRAEDVQGRNVLT 98

Query: 186 NFHGMDLTTDKLRWMVKKWQTLIK 257
            F GMD TTDKLR +VKKWQTLI+
Sbjct: 99  QFWGMDFTTDKLRSLVKKWQTLIE 122



 Score =  106 bits (255), Expect = 1e-23
 Identities = 44/85 (51%), Positives = 67/85 (78%)
 Frame = +2

Query: 254 QANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSEL 433
           +A++DVKTTDGY LR+FCI FT + +   ++TCYAQ +Q+R IR+KM EI+ ++ ++ +L
Sbjct: 122 EAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDL 181

Query: 434 REVVNKLIPDSIAKDIEKACHGIYP 508
           +E+V K IP++I ++IEKA  GIYP
Sbjct: 182 KELVAKFIPEAIGREIEKATQGIYP 206



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/27 (62%), Positives = 24/27 (88%)
 Frame = +1

Query: 505 PLRDVCIRKVKVLKRPRFEISKLMELH 585
           PL++V IRKVK+LK P+F++ KLME+H
Sbjct: 206 PLQNVFIRKVKILKAPKFDLGKLMEVH 232


>At2g46530.1 68415.m05802 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
           domain
          Length = 601

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
 Frame = -2

Query: 299 HVERIHRLSSHQCWLDESLPFFNHPPELIGCEVHAVEV-AEHIT 171
           H+E++   S++Q  +D+ +P FN PP+++ C V +V + AEH T
Sbjct: 47  HMEQLVA-STNQGVVDQEIPVFNLPPKIL-CRVLSVTLKAEHET 88


>At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 907

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
 Frame = -2

Query: 299 HVERIHRLS-SHQCWLDESLPFFNH--PPELIGCEVHAVEVAEHITSLHIFGD*S----E 141
           HVE  H +  + +C L + +P  +H    E +   V AV  +E   SL +  + +    E
Sbjct: 514 HVEERHHVQFAEKCMLLQCIPCGSHFGDKEQLLVHVQAVHPSE-CKSLTVASECNLTNGE 572

Query: 140 FAERPFRVSVSL*ISQGNFENSSLQSFRSNFRSL 39
           F+++P   S  + +SQ N   S +  F   F  L
Sbjct: 573 FSQKPEAGSSQIVVSQNNENTSGVHKFVCKFCGL 606


>At2g21630.1 68415.m02573 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 761

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 244 CHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSAR 92
           CHF T+H  L  + + PW + +  RP   + + L +   L  +     +AR
Sbjct: 238 CHF-TLHSVLEELGNSPWPVAADHRPARCTGVALRIAASLLGACFPGSAAR 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,943,603
Number of Sequences: 28952
Number of extensions: 313684
Number of successful extensions: 953
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)