Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10406
         (813 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    29   0.058
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    24   1.3  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    24   1.7  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   3.8  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 28.7 bits (61), Expect = 0.058
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 93  NTFRFEGSGSRCNYTETLELVSQGGWRI 10
           N+ ++ G      Y E +EL  +GGW++
Sbjct: 286 NSGKYTGEAGMLGYNEIVELQKEGGWKV 313


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 427 LNIKVNYI*TNVFVVELRVGLFSIVGLRVLNVFKYFIRGRQRKSGLTYPH 576
           +N  VN I  N+   + R G F + G++++   +   R   RKS  +  H
Sbjct: 344 INSAVNPILYNIISSKFRSGFFKLCGMKIVKKRRKDKREITRKSTSSSTH 393


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 364 RTRSTNSQFLALQKRFASHCWLNI 435
           RT  T  Q LAL+K+F    +L+I
Sbjct: 119 RTPFTTQQLLALEKKFRDKQYLSI 142


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 84  RFEGSGSRCNYTETLELVSQGGW 16
           R+ G      Y E +E  + GGW
Sbjct: 293 RYTGERGMMGYNEIVEAQNAGGW 315


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,738
Number of Sequences: 336
Number of extensions: 3610
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22206566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)