Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10406
         (813 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC002923-1|AAH02923.1|  634|Homo sapiens POT1 protection of telo...    31   3.7  
AY823524-1|AAW22617.1|  459|Homo sapiens protection of telomeres...    31   3.7  
AY823522-1|AAW22615.1|  518|Homo sapiens protection of telomeres...    31   3.7  
AY823521-1|AAW22614.1|  340|Homo sapiens protection of telomeres...    31   3.7  
AY823520-1|AAW22613.1|  634|Homo sapiens protection of telomeres...    31   3.7  
AK022580-1|BAB14110.1|  634|Homo sapiens protein ( Homo sapiens ...    31   3.7  
AK001935-1|BAA91988.1|  634|Homo sapiens protein ( Homo sapiens ...    31   3.7  
AK001230-1|BAA91568.1|  634|Homo sapiens protein ( Homo sapiens ...    31   3.7  

>BC002923-1|AAH02923.1|  634|Homo sapiens POT1 protection of
           telomeres 1 homolog (S. pombe) protein.
          Length = 634

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 407 RFCNARNCEFVDLVRQLCA*CEFLNVLDSVKVNSNTRTPYKSWNVYL 267
           + C+ +  ++ DL  QL    E       +KV   TRTP+ SW V +
Sbjct: 152 KLCDVQPMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLI 198


>AY823524-1|AAW22617.1|  459|Homo sapiens protection of telomeres
           protein 1 variant 5 protein.
          Length = 459

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 407 RFCNARNCEFVDLVRQLCA*CEFLNVLDSVKVNSNTRTPYKSWNVYL 267
           + C+ +  ++ DL  QL    E       +KV   TRTP+ SW V +
Sbjct: 152 KLCDVQPMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLI 198


>AY823522-1|AAW22615.1|  518|Homo sapiens protection of telomeres
           protein 1 variant 3 protein.
          Length = 518

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 407 RFCNARNCEFVDLVRQLCA*CEFLNVLDSVKVNSNTRTPYKSWNVYL 267
           + C+ +  ++ DL  QL    E       +KV   TRTP+ SW V +
Sbjct: 152 KLCDVQPMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLI 198


>AY823521-1|AAW22614.1|  340|Homo sapiens protection of telomeres
           protein 1 variant 2 protein.
          Length = 340

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 407 RFCNARNCEFVDLVRQLCA*CEFLNVLDSVKVNSNTRTPYKSWNVYL 267
           + C+ +  ++ DL  QL    E       +KV   TRTP+ SW V +
Sbjct: 152 KLCDVQPMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLI 198


>AY823520-1|AAW22613.1|  634|Homo sapiens protection of telomeres
           protein 1 variant 1 protein.
          Length = 634

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 407 RFCNARNCEFVDLVRQLCA*CEFLNVLDSVKVNSNTRTPYKSWNVYL 267
           + C+ +  ++ DL  QL    E       +KV   TRTP+ SW V +
Sbjct: 152 KLCDVQPMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLI 198


>AK022580-1|BAB14110.1|  634|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12518 fis, clone NT2RM2001805. ).
          Length = 634

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 407 RFCNARNCEFVDLVRQLCA*CEFLNVLDSVKVNSNTRTPYKSWNVYL 267
           + C+ +  ++ DL  QL    E       +KV   TRTP+ SW V +
Sbjct: 152 KLCDVQPMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLI 198


>AK001935-1|BAA91988.1|  634|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11073 fis, clone PLACE1005026. ).
          Length = 634

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 407 RFCNARNCEFVDLVRQLCA*CEFLNVLDSVKVNSNTRTPYKSWNVYL 267
           + C+ +  ++ DL  QL    E       +KV   TRTP+ SW V +
Sbjct: 152 KLCDVQPMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLI 198


>AK001230-1|BAA91568.1|  634|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10368 fis, clone NT2RM2001544. ).
          Length = 634

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 407 RFCNARNCEFVDLVRQLCA*CEFLNVLDSVKVNSNTRTPYKSWNVYL 267
           + C+ +  ++ DL  QL    E       +KV   TRTP+ SW V +
Sbjct: 152 KLCDVQPMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLI 198


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,810,387
Number of Sequences: 237096
Number of extensions: 1943152
Number of successful extensions: 7082
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7082
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)