Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10406
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U22831-5|AAK20067.1|  100|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF025471-6|AAB71065.1|  243|Caenorhabditis elegans Hypothetical ...    28   9.1  

>U22831-5|AAK20067.1|  100|Caenorhabditis elegans Hypothetical
           protein F47D12.6 protein.
          Length = 100

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +1

Query: 397 LQKRFASHCWLNIKVNYI*TNVFVVELRVGLFSIVGLRVLNV-FKYFIRGRQRKSGLTYP 573
           +Q  F  +  L  +++    + +++ + + +  I+ L + N+   YFIR R+R+  + YP
Sbjct: 4   IQTFFDQYVHLPSEISSKHDHAYIILILLSVILILLLLICNLCICYFIRQRRRRELIDYP 63

Query: 574 HNHVYYV 594
            N + Y+
Sbjct: 64  SNTLQYI 70


>U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical
           protein F07E5.8 protein.
          Length = 760

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 553 KSGLTYPHNHVYYVYCNVFKIL*ILIQNRPIHS 651
           KS L Y  +H Y++Y N  +++   I N  +HS
Sbjct: 76  KSKLVYSSDHFYFLYWNTIQLIWNSISNLSMHS 108


>AF025471-6|AAB71065.1|  243|Caenorhabditis elegans Hypothetical
           protein R52.8 protein.
          Length = 243

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 424 WLNIKVNYI*TNVFVVELRVGLFSIVGL 507
           W N++ NYI  + F+VE +V +  + G+
Sbjct: 201 WDNLENNYIVNDTFIVEAQVDIIKMTGI 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,439,993
Number of Sequences: 27780
Number of extensions: 312015
Number of successful extensions: 656
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)