Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10406
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    23   3.4  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   4.4  

>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 331 TLRNSH*AHS*RTRSTNSQFLALQKRFASHCWLNI 435
           TLR        RT  T  Q L+L+K+F    +L I
Sbjct: 2   TLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLTI 36


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 298 RVFELTFTLSRTLRNSH*AHS*RTRSTNSQFLALQKRFASHCW 426
           R FEL    + T       H+ RTR  N ++ AL+    +  W
Sbjct: 25  RKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRLDTGNFSW 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,092
Number of Sequences: 438
Number of extensions: 4237
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)