Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10404
(565 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellu... 144 1e-33
UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellul... 125 8e-28
UniRef50_Q8S6I4 Cluster: Putative 40s ribosomal protein S23; n=4... 116 4e-25
UniRef50_Q0W8G5 Cluster: 30S ribosomal protein S12P; n=20; cellu... 93 4e-18
UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Ze... 90 4e-17
UniRef50_Q5AAQ9 Cluster: Putative uncharacterized protein; n=1; ... 85 1e-15
UniRef50_Q8ZYQ4 Cluster: 30S ribosomal protein S12P; n=17; Archa... 83 3e-15
UniRef50_A3H7W0 Cluster: Protein splicing (Intein) site; n=4; ce... 75 2e-12
UniRef50_Q8BGG2 Cluster: Adult male spinal cord cDNA, RIKEN full... 60 5e-08
UniRef50_UPI00004CC6C0 Cluster: PREDICTED: hypothetical protein;... 55 1e-06
UniRef50_A3B198 Cluster: Putative uncharacterized protein; n=1; ... 51 2e-05
UniRef50_UPI00015B40B9 Cluster: PREDICTED: similar to mitochondr... 47 3e-04
UniRef50_Q1HPJ4 Cluster: Mitochondrial ribosomal protein S12; n=... 45 0.001
UniRef50_Q9NEH6 Cluster: EG:BACH59J11.1 protein; n=2; Bilateria|... 41 0.017
UniRef50_P10735 Cluster: 40S ribosomal protein S12, mitochondria... 41 0.017
UniRef50_UPI0000D55D7C Cluster: PREDICTED: similar to 40S riboso... 39 0.093
UniRef50_Q7SZ18 Cluster: Mrps12-prov protein; n=8; Euteleostomi|... 38 0.21
UniRef50_Q9XTY5 Cluster: Putative uncharacterized protein; n=2; ... 36 0.86
UniRef50_A5DX89 Cluster: 30S ribosomal protein S12; n=6; Sacchar... 36 0.86
UniRef50_O15235 Cluster: 28S ribosomal protein S12, mitochondria... 36 0.86
UniRef50_O70089 Cluster: 30S ribosomal protein S12; n=35; cellul... 36 0.86
UniRef50_Q5K6X0 Cluster: Ribosomal protein S12, putative; n=2; D... 35 1.1
UniRef50_Q11EN9 Cluster: Putative uncharacterized protein; n=1; ... 34 2.6
UniRef50_O85884 Cluster: Putative uncharacterized protein orf433... 33 4.6
UniRef50_A0CUX9 Cluster: Chromosome undetermined scaffold_29, wh... 33 4.6
UniRef50_UPI000049A59F Cluster: ankyrin repeat protein; n=1; Ent... 32 8.1
UniRef50_A4XF13 Cluster: Transcriptional regulator, LysR family;... 32 8.1
>UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellular
organisms|Rep: 40S ribosomal protein S23 - Homo sapiens
(Human)
Length = 143
Score = 144 bits (349), Expect = 1e-33
Identities = 66/80 (82%), Positives = 74/80 (92%)
Frame = +1
Query: 22 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 201
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 202 QPNSAIRKCVRVQLIKNGRK 261
QPNSAIRKCVRVQLIKNG+K
Sbjct: 61 QPNSAIRKCVRVQLIKNGKK 80
Score = 129 bits (312), Expect = 4e-29
Identities = 61/65 (93%), Positives = 62/65 (95%)
Frame = +3
Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 434
KK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KK
Sbjct: 79 KKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 138
Query: 435 ERPRS 449
ERPRS
Sbjct: 139 ERPRS 143
>UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellular
organisms|Rep: 40S ribosomal protein S23 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 145
Score = 125 bits (301), Expect = 8e-28
Identities = 55/79 (69%), Positives = 68/79 (86%)
Frame = +1
Query: 25 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 204
GKPRG+ +ARK HRR RWA+ +KK +GT +K++PFGG+SHAKGIVLEK+G+E+KQ
Sbjct: 4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQ 63
Query: 205 PNSAIRKCVRVQLIKNGRK 261
PNSAIRKCVRVQLIKNG+K
Sbjct: 64 PNSAIRKCVRVQLIKNGKK 82
Score = 117 bits (281), Expect = 2e-25
Identities = 54/65 (83%), Positives = 60/65 (92%)
Frame = +3
Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 434
KKVTAFVP DGCLN ++ENDEVL+AGFGRKG A GDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 81 KKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKK 140
Query: 435 ERPRS 449
E+PRS
Sbjct: 141 EKPRS 145
>UniRef50_Q8S6I4 Cluster: Putative 40s ribosomal protein S23; n=4;
Oryza sativa|Rep: Putative 40s ribosomal protein S23 -
Oryza sativa (Rice)
Length = 301
Score = 116 bits (279), Expect = 4e-25
Identities = 52/78 (66%), Positives = 61/78 (78%)
Frame = +1
Query: 28 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 207
K G+ RK HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 208 NSAIRKCVRVQLIKNGRK 261
NSAI KC RVQL+KNG+K
Sbjct: 133 NSAICKCARVQLVKNGKK 150
Score = 37.1 bits (82), Expect = 0.28
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +3
Query: 255 KKVTAFVPRDGCLNHIEENDEV 320
KK+ AFVP DGCLN I+EN V
Sbjct: 149 KKIAAFVPNDGCLNFIKENGPV 170
>UniRef50_Q0W8G5 Cluster: 30S ribosomal protein S12P; n=20; cellular
organisms|Rep: 30S ribosomal protein S12P - Uncultured
methanogenic archaeon RC-I
Length = 142
Score = 93.1 bits (221), Expect = 4e-18
Identities = 43/70 (61%), Positives = 55/70 (78%)
Frame = +1
Query: 52 RKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV 231
RK V+ R+ RW+D+++ + + KA+P GA AKGIVLEKVGVEAKQPNSAIRKC+
Sbjct: 9 RKLVHDRKLYRWSDRDYARRVLRLDEKADPLEGAPQAKGIVLEKVGVEAKQPNSAIRKCI 68
Query: 232 RVQLIKNGRK 261
R+QLIKNGR+
Sbjct: 69 RIQLIKNGRQ 78
Score = 69.3 bits (162), Expect = 6e-11
Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFG-RKGHAVGDIPGVRFKVVKVANVSLLALYKEK 431
+++TAF P DG +N I+E+DEV + G G R G + GDIPGVRF+V KV +VSL + K
Sbjct: 77 RQITAFCPGDGAINFIDEHDEVTIEGIGGRMGGSYGDIPGVRFRVFKVNDVSLEEMVAGK 136
Query: 432 KERP 443
+++P
Sbjct: 137 RDKP 140
>UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Zea
mays|Rep: Putative 40S ribosomal protein - Zea mays
(Maize)
Length = 309
Score = 89.8 bits (213), Expect = 4e-17
Identities = 41/46 (89%), Positives = 45/46 (97%)
Frame = +3
Query: 312 DEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 449
DEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 224 DEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 269
>UniRef50_Q5AAQ9 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 102
Score = 84.6 bits (200), Expect = 1e-15
Identities = 42/67 (62%), Positives = 47/67 (70%)
Frame = -1
Query: 457 YTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 278
Y YDLG SFFS +A ++T T TTL TPG+SP A PL P PA TSSFSS F+QPS
Sbjct: 3 YIYDLGFSFFSFHKANKETPETLTTLNLTPGISPLALPLLPKPANKTSSFSSTKFKQPSF 62
Query: 277 GTNAVTF 257
GT AVTF
Sbjct: 63 GTKAVTF 69
Score = 48.0 bits (109), Expect = 2e-04
Identities = 21/40 (52%), Positives = 27/40 (67%)
Frame = -3
Query: 278 GDECGHFLPFLMSCTRTHLRMAELGCLASTPTFSRTMPFA 159
G + FLPFL++ T TH +AE GCL S P FS+T+P A
Sbjct: 63 GTKAVTFLPFLINWTSTHFSIAEFGCLDSIPIFSKTIPLA 102
>UniRef50_Q8ZYQ4 Cluster: 30S ribosomal protein S12P; n=17;
Archaea|Rep: 30S ribosomal protein S12P - Pyrobaculum
aerophilum
Length = 147
Score = 83.4 bits (197), Expect = 3e-15
Identities = 39/76 (51%), Positives = 53/76 (69%)
Frame = +1
Query: 31 PRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 210
P G+ K R++ RW D +K+ +G K +P GA A+GIVLEKVGVEA++PN
Sbjct: 7 PYGLFAGGKLKRKRQKFRWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPN 66
Query: 211 SAIRKCVRVQLIKNGR 258
+A+RKCVRVQL+KNG+
Sbjct: 67 AAVRKCVRVQLVKNGK 82
Score = 78.2 bits (184), Expect = 1e-13
Identities = 37/64 (57%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Frame = +3
Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGR-KGHAVGDIPGVRFKVVKVANVSLLALYKEK 431
K VTAFVP DG LN+I E+DEV++ G +G ++GDIPGVRFKV+KV VSL A+++ K
Sbjct: 82 KVVTAFVPLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGK 141
Query: 432 KERP 443
K++P
Sbjct: 142 KQKP 145
>UniRef50_A3H7W0 Cluster: Protein splicing (Intein) site; n=4;
cellular organisms|Rep: Protein splicing (Intein) site -
Caldivirga maquilingensis IC-167
Length = 661
Score = 74.5 bits (175), Expect = 2e-12
Identities = 36/74 (48%), Positives = 50/74 (67%)
Frame = +1
Query: 31 PRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 210
P G+ ARK R++ RW+D ++KK +G K +P GA A+GIVLEKVGVEA++PN
Sbjct: 7 PLGLYAARKLRRKRQKFRWSDIQYKKRALGFIKKYDPLEGAPMARGIVLEKVGVEARKPN 66
Query: 211 SAIRKCVRVQLIKN 252
+A+RKCV + N
Sbjct: 67 AAVRKCVTPDTLIN 80
Score = 70.9 bits (166), Expect = 2e-11
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGR-KGHAVGDIPGVRFKVVKVANVSLLALYKEK 431
K VTAFVP DG LN I E+DEV++ G +G A GD+PGVRFKV KV VSL A+ K
Sbjct: 596 KVVTAFVPWDGGLNLINEHDEVIIERIGGPEGRAYGDLPGVRFKVTKVNGVSLKAILLGK 655
Query: 432 KERP 443
K++P
Sbjct: 656 KQKP 659
>UniRef50_Q8BGG2 Cluster: Adult male spinal cord cDNA, RIKEN
full-length enriched library, clone:A330001L23
product:hypothetical protein, full insert sequence; n=8;
Euarchontoglires|Rep: Adult male spinal cord cDNA, RIKEN
full-length enriched library, clone:A330001L23
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 154
Score = 59.7 bits (138), Expect = 5e-08
Identities = 33/85 (38%), Positives = 44/85 (51%)
Frame = -2
Query: 261 LSSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPS 82
L VLNEL+ DA DGR+ L F + ++LC+R T +R+ L VGFL FV P
Sbjct: 31 LLPVLNELHPDALPDGRIWLFGLNPYFFQHNSLCMRGTPKRIGLQGCAQVGFLVLFVMPL 90
Query: 81 LFTTVVHVLTRRSYSSGFTHLDSTT 7
L +V L S ++ HL T
Sbjct: 91 LVPSVTAELPGSSETTTLAHLAGAT 115
>UniRef50_UPI00004CC6C0 Cluster: PREDICTED: hypothetical protein;
n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
Mus musculus
Length = 143
Score = 54.8 bits (126), Expect = 1e-06
Identities = 30/80 (37%), Positives = 41/80 (51%)
Frame = -2
Query: 261 LSSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPS 82
L VLNEL+ DA DGR+ L F + ++LC+R +R+ L VGFL FV P
Sbjct: 62 LLPVLNELHPDALPDGRIWLFGLNPYFFQHNSLCMRGAPKRIGLQGCAQVGFLVLFVMPL 121
Query: 81 LFTTVVHVLTRRSYSSGFTH 22
L +V L S ++ H
Sbjct: 122 LVPSVTAELPGSSETTTLAH 141
Score = 40.3 bits (90), Expect = 0.030
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = -3
Query: 422 VESEERHVGYFYHLKTNSGNVTDGVTFTTESRH*YXXXXXXXX*ATVTGDECGHFLPFL 246
++S++R++GYF HLK +S ++T +TF+T+S + + A + G E LP L
Sbjct: 9 LQSQQRNIGYFNHLKEDSRDITYSMTFSTKSSN-WIIIFLNEVQAAIIGHERCDLLPVL 66
>UniRef50_A3B198 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 128
Score = 51.2 bits (117), Expect = 2e-05
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3
Query: 312 DEVLVAGFGRKGHAVGDIPGVRFKVVK 392
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>UniRef50_UPI00015B40B9 Cluster: PREDICTED: similar to mitochondrial
ribosomal protein S12; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to mitochondrial ribosomal protein
S12 - Nasonia vitripennis
Length = 173
Score = 46.8 bits (106), Expect = 3e-04
Identities = 23/42 (54%), Positives = 31/42 (73%)
Frame = +1
Query: 136 NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 261
NPF GA AKG+VL+ + + K+PNSA RKCV V+L NG++
Sbjct: 83 NPFNGAPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-SNGKE 123
>UniRef50_Q1HPJ4 Cluster: Mitochondrial ribosomal protein S12; n=3;
Coelomata|Rep: Mitochondrial ribosomal protein S12 -
Bombyx mori (Silk moth)
Length = 111
Score = 44.8 bits (101), Expect = 0.001
Identities = 23/50 (46%), Positives = 32/50 (64%)
Frame = +1
Query: 112 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 261
H+ + NP G AKG+VL+ V + K+PNSA RKCV V+L NG++
Sbjct: 13 HIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKE 61
>UniRef50_Q9NEH6 Cluster: EG:BACH59J11.1 protein; n=2;
Bilateria|Rep: EG:BACH59J11.1 protein - Drosophila
melanogaster (Fruit fly)
Length = 154
Score = 41.1 bits (92), Expect = 0.017
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +1
Query: 112 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 243
H+ T+ P G AKG+VL+ + + K+PNSA RKCV V+L
Sbjct: 56 HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL 99
>UniRef50_P10735 Cluster: 40S ribosomal protein S12, mitochondrial
precursor; n=7; Coelomata|Rep: 40S ribosomal protein
S12, mitochondrial precursor - Drosophila melanogaster
(Fruit fly)
Length = 140
Score = 41.1 bits (92), Expect = 0.017
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +1
Query: 112 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 243
H+ T+ P G AKG+VL+ + + K+PNSA RKCV V+L
Sbjct: 42 HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL 85
>UniRef50_UPI0000D55D7C Cluster: PREDICTED: similar to 40S ribosomal
protein S12, mitochondrial precursor (MT-RPS12)
(Technical knockout locus protein); n=2; Coelomata|Rep:
PREDICTED: similar to 40S ribosomal protein S12,
mitochondrial precursor (MT-RPS12) (Technical knockout
locus protein) - Tribolium castaneum
Length = 156
Score = 38.7 bits (86), Expect = 0.093
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +1
Query: 112 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 261
H+ + P G KG+VL+ + + K+PNSA RKCV V+L NG++
Sbjct: 60 HIKERKPRRPLDGKPFMKGVVLKTLIKKPKKPNSANRKCVLVRL-SNGKE 108
>UniRef50_Q7SZ18 Cluster: Mrps12-prov protein; n=8;
Euteleostomi|Rep: Mrps12-prov protein - Xenopus laevis
(African clawed frog)
Length = 150
Score = 37.5 bits (83), Expect = 0.21
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +1
Query: 139 PFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 261
P G KG+VL+ + + K+PNSA RKC RV+L NG++
Sbjct: 62 PTFGCPQLKGVVLKTMIRKPKKPNSANRKCARVRL-SNGKE 101
>UniRef50_Q9XTY5 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 157
Score = 35.5 bits (78), Expect = 0.86
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +1
Query: 148 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 243
G SH KGIVL+ V K+PNS RKC V+L
Sbjct: 72 GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103
>UniRef50_A5DX89 Cluster: 30S ribosomal protein S12; n=6;
Saccharomycetales|Rep: 30S ribosomal protein S12 -
Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 183
Score = 35.5 bits (78), Expect = 0.86
Identities = 15/32 (46%), Positives = 25/32 (78%)
Frame = +1
Query: 163 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGR 258
+G++L + ++ K+PNSA+RKC RV+L NG+
Sbjct: 90 RGVILRIMILKPKKPNSALRKCARVRL-SNGK 120
>UniRef50_O15235 Cluster: 28S ribosomal protein S12, mitochondrial
precursor; n=13; Deuterostomia|Rep: 28S ribosomal
protein S12, mitochondrial precursor - Homo sapiens
(Human)
Length = 138
Score = 35.5 bits (78), Expect = 0.86
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +1
Query: 130 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 261
K P G KG+VL + K+PNSA RKC RV+L GR+
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90
>UniRef50_O70089 Cluster: 30S ribosomal protein S12; n=35; cellular
organisms|Rep: 30S ribosomal protein S12 - Aquifex
aeolicus
Length = 128
Score = 35.5 bits (78), Expect = 0.86
Identities = 20/47 (42%), Positives = 34/47 (72%)
Frame = +3
Query: 258 KVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVA 398
+VTA++P +G ++++E+ VLV G GR V D+PGVR+K+++ A
Sbjct: 62 EVTAYIPGEG--HNLQEHSIVLVRG-GR----VKDLPGVRYKIIRGA 101
Score = 32.7 bits (71), Expect = 6.1
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +1
Query: 124 KWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNG 255
K KA G +G+ + V K+PNSA+RK RV+L NG
Sbjct: 18 KSKAPALQGCPQKRGVCVRVYTVTPKKPNSALRKVARVRL-SNG 60
>UniRef50_Q5K6X0 Cluster: Ribosomal protein S12, putative; n=2;
Dikarya|Rep: Ribosomal protein S12, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 176
Score = 35.1 bits (77), Expect = 1.1
Identities = 18/43 (41%), Positives = 30/43 (69%)
Frame = +3
Query: 264 TAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 392
TA++P +G ++++E+ VLV G G K D+PGVR+K+V+
Sbjct: 115 TAYIPGEG--HNLQEHSVVLVRGGGAK-----DLPGVRYKIVR 150
>UniRef50_Q11EN9 Cluster: Putative uncharacterized protein; n=1;
Mesorhizobium sp. BNC1|Rep: Putative uncharacterized
protein - Mesorhizobium sp. (strain BNC1)
Length = 338
Score = 33.9 bits (74), Expect = 2.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 257 LPFLMSCTRTHLRMAELGCLASTPTFSRTMPFA 159
LP + R+H ++ E+ C + P +S T+PFA
Sbjct: 239 LPTAFNSARSHNKILEIACFGAAPVYSSTVPFA 271
>UniRef50_O85884 Cluster: Putative uncharacterized protein orf433;
n=2; Novosphingobium aromaticivorans|Rep: Putative
uncharacterized protein orf433 - Sphingomonas
aromaticivorans
Length = 651
Score = 33.1 bits (72), Expect = 4.6
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = -2
Query: 333 IPPLVLRRFLRCGLGNRHGGRMRSLSSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVR 154
+P +LR +GN HG +++ + + LN+L + F D R + + +T A +
Sbjct: 94 VPVWAAHEYLRHHMGNLHGKKLKGIETALNDLANNTFNDLRPYIDTSFTGDSRSPAEIIA 153
Query: 153 CT 148
T
Sbjct: 154 AT 155
>UniRef50_A0CUX9 Cluster: Chromosome undetermined scaffold_29, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_29,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 107
Score = 33.1 bits (72), Expect = 4.6
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 55 KHVNHRREQ--RWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKC 228
K H+R Q W K+F K + T+ + G H KG+++ K G + N + +
Sbjct: 26 KITKHKRVQGRAWRRKQFNKRKVQTQLQKTLVGQQIHLKGVLVHKKGPNWHKGNKQLLEK 85
Query: 229 VRVQLIKNGRK 261
+++L++ R+
Sbjct: 86 EKIELVQLKRE 96
>UniRef50_UPI000049A59F Cluster: ankyrin repeat protein; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: ankyrin repeat
protein - Entamoeba histolytica HM-1:IMSS
Length = 681
Score = 32.3 bits (70), Expect = 8.1
Identities = 20/65 (30%), Positives = 38/65 (58%)
Frame = +3
Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 434
+ V+ F+P + L ++ N+ V V +KG AVG I G R+ + +A +++ L KE++
Sbjct: 548 RMVSDFMPEEEELLRLKSNEIVEVYWEHKKGWAVGGING-RYGMFPLAKGTIIPLSKEEQ 606
Query: 435 ERPRS 449
++ S
Sbjct: 607 DKINS 611
>UniRef50_A4XF13 Cluster: Transcriptional regulator, LysR family;
n=1; Novosphingobium aromaticivorans DSM 12444|Rep:
Transcriptional regulator, LysR family - Novosphingobium
aromaticivorans (strain DSM 12444)
Length = 315
Score = 32.3 bits (70), Expect = 8.1
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 52 RKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 204
R+H + W EF A G W ANP G A+ A G+V + KQ
Sbjct: 193 RRHAGALQSLGWG-YEFDAALPGGPWSANPAGEAAQAAGLVTFNAWPQLKQ 242
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,628,321
Number of Sequences: 1657284
Number of extensions: 12809981
Number of successful extensions: 32526
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 31237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32401
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37904934977
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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