Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10404
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 133 1e-32
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 133 1e-32
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 30 0.20
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 4.4
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 25 5.8
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 5.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 5.8
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr... 25 5.8
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 25 7.7
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 133 bits (322), Expect = 1e-32
Identities = 59/80 (73%), Positives = 70/80 (87%)
Frame = +1
Query: 22 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 201
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60
Query: 202 QPNSAIRKCVRVQLIKNGRK 261
QPNSAIRKCVRVQLIKNG+K
Sbjct: 61 QPNSAIRKCVRVQLIKNGKK 80
Score = 109 bits (263), Expect = 2e-25
Identities = 50/65 (76%), Positives = 57/65 (87%)
Frame = +3
Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 434
KKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKK
Sbjct: 79 KKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKK 138
Query: 435 ERPRS 449
E+PR+
Sbjct: 139 EKPRA 143
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 133 bits (322), Expect = 1e-32
Identities = 59/80 (73%), Positives = 70/80 (87%)
Frame = +1
Query: 22 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 201
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60
Query: 202 QPNSAIRKCVRVQLIKNGRK 261
QPNSAIRKCVRVQLIKNG+K
Sbjct: 61 QPNSAIRKCVRVQLIKNGKK 80
Score = 109 bits (263), Expect = 2e-25
Identities = 50/65 (76%), Positives = 57/65 (87%)
Frame = +3
Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 434
KKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKK
Sbjct: 79 KKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKK 138
Query: 435 ERPRS 449
E+PR+
Sbjct: 139 EKPRA 143
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 30.3 bits (65), Expect = 0.20
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 148 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 243
G+ +G+ V+ K+PNSA+RK RV+L
Sbjct: 47 GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL 78
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 388 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 278
+++K P + P P P+ AT+TSS +++ PSR
Sbjct: 392 SSVKALPTLEP---PSSPSHATATSSLHTLFHTAPSR 425
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 85 WADKEFKKAHMGTKWKANPFGGASHAKGIV 174
W D EF H K+ PF +H K V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 565 FFFFFFAVHNIYYVLGFYIYELINNALP 482
FFFFFF H + + +I+ +N +P
Sbjct: 79 FFFFFFFSHCRRFHIAIFIHPYDSNVVP 106
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 91 PPIAVHDGGSRAYAP 47
PP AV GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795
>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 5.8
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 446 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 324
SW L+++ V S+E+ GY L N+ D G+ ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -3
Query: 545 CTQYLLCTRILHL*TYKQRASRQQVTYHNVH 453
C QY +H+ K+ QQ+TY VH
Sbjct: 277 CLQYTNTDLEMHIWEEKETIYEQQMTYQKVH 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,878
Number of Sequences: 5004
Number of extensions: 51327
Number of successful extensions: 117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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