Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10404
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 132 2e-31
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 128 4e-30
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 116 1e-26
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 6e-07
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 29 2.6
04_01_0440 + 5746474-5746662,5746895-5747251 28 4.5
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458... 28 5.9
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 27 7.8
01_01_0357 - 2816650-2817897 27 7.8
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 132 bits (319), Expect = 2e-31
Identities = 57/85 (67%), Positives = 69/85 (81%)
Frame = +1
Query: 7 CRAIQMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKV 186
C ++ MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+
Sbjct: 166 CPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 224
Query: 187 GVEAKQPNSAIRKCVRVQLIKNGRK 261
G+EAKQPNSAIRKC RVQL+KNG+K
Sbjct: 225 GIEAKQPNSAIRKCARVQLVKNGKK 249
Score = 128 bits (308), Expect = 4e-30
Identities = 56/80 (70%), Positives = 66/80 (82%)
Frame = +1
Query: 22 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 201
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 202 QPNSAIRKCVRVQLIKNGRK 261
QPNSAIRKC RVQL+KNG+K
Sbjct: 60 QPNSAIRKCARVQLVKNGKK 79
Score = 123 bits (297), Expect = 9e-29
Identities = 56/65 (86%), Positives = 61/65 (93%)
Frame = +3
Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 434
KK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 248 KKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 307
Query: 435 ERPRS 449
E+PRS
Sbjct: 308 EKPRS 312
Score = 120 bits (288), Expect = 1e-27
Identities = 54/63 (85%), Positives = 59/63 (93%)
Frame = +3
Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 434
KK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 78 KKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137
Query: 435 ERP 443
E+P
Sbjct: 138 EKP 140
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 128 bits (308), Expect = 4e-30
Identities = 56/80 (70%), Positives = 66/80 (82%)
Frame = +1
Query: 22 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 201
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 202 QPNSAIRKCVRVQLIKNGRK 261
QPNSAIRKC RVQL+KNG+K
Sbjct: 60 QPNSAIRKCARVQLVKNGKK 79
Score = 123 bits (297), Expect = 9e-29
Identities = 56/65 (86%), Positives = 61/65 (93%)
Frame = +3
Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 434
KK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 78 KKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137
Query: 435 ERPRS 449
E+PRS
Sbjct: 138 EKPRS 142
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 116 bits (279), Expect = 1e-26
Identities = 52/78 (66%), Positives = 61/78 (78%)
Frame = +1
Query: 28 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 207
K G+ RK HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 208 NSAIRKCVRVQLIKNGRK 261
NSAI KC RVQL+KNG+K
Sbjct: 133 NSAICKCARVQLVKNGKK 150
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3
Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAG 332
KK+ AFVP DGCLN I+EN+ V G
Sbjct: 149 KKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3
Query: 312 DEVLVAGFGRKGHAVGDIPGVRFKVVK 392
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 343 LRPNPATSTSSFSSMWFRQPSRGTNAVTFFR 251
L P+ +T T +FS WFR PS+ T + R
Sbjct: 196 LPPDGSTVTIAFSERWFRIPSKWTEEKLYAR 226
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 81 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 179
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
>01_03_0200 +
13744735-13745037,13745071-13745610,13745704-13745862,
13748992-13749123,13749282-13749472,13749541-13749792,
13750248-13750323,13750411-13750602,13750688-13750689,
13753230-13753287,13753736-13754941
Length = 1036
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/22 (63%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = -2
Query: 306 LRCGLGNR-HGGRMRSLSSVLN 244
LR LGNR HGGR+R +SS L+
Sbjct: 152 LRQALGNREHGGRVRGVSSKLS 173
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = -2
Query: 480 TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRI 331
T GH+++ P+ L LCR E + ++ P E E H+ DL I
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNI 191
>01_01_0357 - 2816650-2817897
Length = 415
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 360 HRRRDLYDRIPPLVLRRFLRCGLGNRHGG 274
H+ ++ DR+PPLVLR + G R G
Sbjct: 175 HQAQEHQDRVPPLVLRHAQQLGRARRVPG 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,725,966
Number of Sequences: 37544
Number of extensions: 380799
Number of successful extensions: 1052
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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