Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10404
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              142   1e-34
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              129   2e-30
SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)                      32   0.37 
SB_3221| Best HMM Match : rve (HMM E-Value=3)                          29   2.0  
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)                28   4.6  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   28   4.6  
SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)                 27   8.0  
SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                 27   8.0  

>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  142 bits (345), Expect = 1e-34
 Identities = 65/78 (83%), Positives = 72/78 (92%)
 Frame = +1

Query: 28  KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 207
           KPRG+RTARK  +HRR+Q+W DK +KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQP
Sbjct: 2   KPRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 61

Query: 208 NSAIRKCVRVQLIKNGRK 261
           NSAIRKCVRVQLIKNG+K
Sbjct: 62  NSAIRKCVRVQLIKNGKK 79



 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 33/40 (82%), Positives = 39/40 (97%)
 Frame = +3

Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGV 374
           KK+TAFVP DGCLN+IEENDEVL++GFGR+GHAVGDIPG+
Sbjct: 78  KKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score =  129 bits (311), Expect = 2e-30
 Identities = 58/65 (89%), Positives = 64/65 (98%)
 Frame = +3

Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 434
           KK+TAFVP DGCLN+IEENDEVL++GFGR+GHAVGDIPGVRFKVVKVANVSLLAL+KEKK
Sbjct: 79  KKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKK 138

Query: 435 ERPRS 449
           ERPRS
Sbjct: 139 ERPRS 143



 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 24/28 (85%), Positives = 27/28 (96%)
 Frame = +1

Query: 178 EKVGVEAKQPNSAIRKCVRVQLIKNGRK 261
           ++ GVEAKQPNSAIRKCVRVQLIKNG+K
Sbjct: 53  QEPGVEAKQPNSAIRKCVRVQLIKNGKK 80


>SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)
          Length = 488

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
 Frame = -3

Query: 245 MSCTRTHLRMAELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHR 81
           M C   +    E+ C    PT  R     T     DA P GL  H   M   L+  +  R
Sbjct: 58  MPCQLDYPNYREMPCQLDCPTTERCPANWTTQLQRDALPTGLPKHR-EMPCQLDYPTTER 116

Query: 80  CSRRWFTCLRAVRIPRGLP 24
           C   W T L+   +P GLP
Sbjct: 117 CPANWTTQLQRDALPTGLP 135



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = -3

Query: 212 ELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRWFTCLRA 48
           E+ C    PT  R     T     DA P GL  ++  M   L+  +  RC   W T L+ 
Sbjct: 139 EMPCQLDYPTTERCPANWTTQLQRDALPTGLP-NYREMSCQLDYPTTERCPANWTTQLQR 197

Query: 47  VRIPRGLP 24
             +P GLP
Sbjct: 198 DTLPTGLP 205



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = -3

Query: 212 ELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRWFTCLRA 48
           E+ C    PT  R     T     DA P GL  ++  M   L+  +  RC   W T L+ 
Sbjct: 104 EMPCQLDYPTTERCPANWTTQLQRDALPTGLP-NYREMPCQLDYPTTERCPANWTTQLQR 162

Query: 47  VRIPRGLP 24
             +P GLP
Sbjct: 163 DALPTGLP 170


>SB_3221| Best HMM Match : rve (HMM E-Value=3)
          Length = 324

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = -1

Query: 472 SLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWF 293
           S  T  TYDL  SF+S+  +  + LAT   +K++P +   +  L+P  A   S  S    
Sbjct: 9   SFDTFPTYDLA-SFYSVLCSGDEQLATIKLMKKSPSLFQKSHTLKPR-ANCASIASETLA 66

Query: 292 RQPSRGTNAV 263
           +Q  R  N V
Sbjct: 67  QQCWRSLNTV 76


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 108 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 206
           S HG  MEG P  W +S  G  P+ S C S +A
Sbjct: 85  SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117


>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
          Length = 623

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 415 LSTKRKRSDQDHRCTL**VTCCREARCL*VHKCKILVHNKYCV 543
           +S+KR RS+  + C    V CC E     V KC   V  K CV
Sbjct: 1   MSSKRTRSESSNLC----VVCCEEIEFSAVGKCDHPVCYKCCV 39


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -2

Query: 288  NRHGGRMRSLS--SVLNELYTDAFADGRVGLLSFYTNFLEDDALCVRCTTE-RVSLPFRT 118
            +R+GGRM+SL+  S  N +  D      +   + + +  ED++  +  +T   + LP+RT
Sbjct: 1851 SRNGGRMKSLANRSGRNGVIRDLLGSQALDTAASFESLTEDESAAITGSTVCSIPLPYRT 1910


>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 694

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 415 LSTKRKRSDQDHRCTL**VTCCREARCL*VHKCKILVHNKYCV 543
           +S+KR RS+  + C    V CC E     V KC   V  K CV
Sbjct: 1   MSSKRTRSESSNLC----VVCCEEIEFSAVGKCDHPVCYKCCV 39


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -3

Query: 176  RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 81
            R +PF+   APPKG  F  VP+W +F N S+  HR
Sbjct: 902  RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936


>SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)
          Length = 255

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 68  TVVNSDGRTKNSRKPTWVRNGRLTLSVVHLT 160
           T V    R  N++KP  +R+GR+T+S+  +T
Sbjct: 103 THVQFHHRDTNTKKPVHLRDGRVTVSLAAMT 133


>SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 256

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 100 ILCPPIAVHDGGSRAYAPFV 41
           ++ PP  + DG SRA+APF+
Sbjct: 215 LIKPPSTIVDGRSRAHAPFI 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,070,588
Number of Sequences: 59808
Number of extensions: 435030
Number of successful extensions: 941
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)