Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10404
         (565 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S...   144   2e-34
CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.               144   2e-34
BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23 p...   144   2e-34
AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23 p...   119   8e-27
Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal p...    36   0.13 
CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.               36   0.13 
BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal...    36   0.13 
BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal...    36   0.13 
BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal...    36   0.13 
AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12 p...    36   0.13 
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.     30   6.5  

>D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S28
           homologue protein.
          Length = 143

 Score =  144 bits (349), Expect = 2e-34
 Identities = 66/80 (82%), Positives = 74/80 (92%)
 Frame = +1

Query: 22  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 201
           MGK RG+RTARK  +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1   MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60

Query: 202 QPNSAIRKCVRVQLIKNGRK 261
           QPNSAIRKCVRVQLIKNG+K
Sbjct: 61  QPNSAIRKCVRVQLIKNGKK 80



 Score =  129 bits (312), Expect = 6e-30
 Identities = 61/65 (93%), Positives = 62/65 (95%)
 Frame = +3

Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 434
           KK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KK
Sbjct: 79  KKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 138

Query: 435 ERPRS 449
           ERPRS
Sbjct: 139 ERPRS 143


>CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.
          Length = 143

 Score =  144 bits (349), Expect = 2e-34
 Identities = 66/80 (82%), Positives = 74/80 (92%)
 Frame = +1

Query: 22  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 201
           MGK RG+RTARK  +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1   MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60

Query: 202 QPNSAIRKCVRVQLIKNGRK 261
           QPNSAIRKCVRVQLIKNG+K
Sbjct: 61  QPNSAIRKCVRVQLIKNGKK 80



 Score =  129 bits (312), Expect = 6e-30
 Identities = 61/65 (93%), Positives = 62/65 (95%)
 Frame = +3

Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 434
           KK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KK
Sbjct: 79  KKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 138

Query: 435 ERPRS 449
           ERPRS
Sbjct: 139 ERPRS 143


>BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23
           protein.
          Length = 143

 Score =  144 bits (349), Expect = 2e-34
 Identities = 66/80 (82%), Positives = 74/80 (92%)
 Frame = +1

Query: 22  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 201
           MGK RG+RTARK  +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1   MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60

Query: 202 QPNSAIRKCVRVQLIKNGRK 261
           QPNSAIRKCVRVQLIKNG+K
Sbjct: 61  QPNSAIRKCVRVQLIKNGKK 80



 Score =  129 bits (312), Expect = 6e-30
 Identities = 61/65 (93%), Positives = 62/65 (95%)
 Frame = +3

Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 434
           KK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KK
Sbjct: 79  KKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 138

Query: 435 ERPRS 449
           ERPRS
Sbjct: 139 ERPRS 143


>AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23
           protein.
          Length = 59

 Score =  119 bits (286), Expect = 8e-27
 Identities = 56/59 (94%), Positives = 56/59 (94%)
 Frame = +3

Query: 270 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 446
           FVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 1   FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59


>Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 precursor protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 0.13
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +1

Query: 130 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 261
           K  P  G    KG+VL     + K+PNSA RKC RV+L   GR+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90


>CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 0.13
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +1

Query: 130 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 261
           K  P  G    KG+VL     + K+PNSA RKC RV+L   GR+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90


>BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 0.13
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +1

Query: 130 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 261
           K  P  G    KG+VL     + K+PNSA RKC RV+L   GR+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90


>BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 0.13
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +1

Query: 130 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 261
           K  P  G    KG+VL     + K+PNSA RKC RV+L   GR+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90


>BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 0.13
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +1

Query: 130 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 261
           K  P  G    KG+VL     + K+PNSA RKC RV+L   GR+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90


>AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12
           protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 0.13
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +1

Query: 130 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 261
           K  P  G    KG+VL     + K+PNSA RKC RV+L   GR+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90


>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
          Length = 1332

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +3

Query: 108 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AAQLCHPQMRPC 236
           SPHG +M G P          RP ES+C         PQ RPC
Sbjct: 37  SPHGPDMSG-PLEGADGGGDPRPGESFCPGGVPSPGPPQHRPC 78


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,320,578
Number of Sequences: 237096
Number of extensions: 1997612
Number of successful extensions: 6556
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6556
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)