Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10403
         (796 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    41   0.041
UniRef50_A7T177 Cluster: Predicted protein; n=1; Nematostella ve...    36   1.5  
UniRef50_Q4P7W1 Cluster: Putative uncharacterized protein; n=1; ...    33   6.2  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 40.7 bits (91), Expect = 0.041
 Identities = 17/20 (85%), Positives = 18/20 (90%)
 Frame = +2

Query: 431  LWNELHSTVFAERYDISFFK 490
            LWNEL STVF ERYD+SFFK
Sbjct: 941  LWNELPSTVFPERYDMSFFK 960


>UniRef50_A7T177 Cluster: Predicted protein; n=1; Nematostella
          vectensis|Rep: Predicted protein - Nematostella
          vectensis
          Length = 121

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1

Query: 4  CWCYMISALHYLSYKTC 54
          CWCY   AL YLSY+TC
Sbjct: 47 CWCYQSCALEYLSYQTC 63



 Score = 33.9 bits (74), Expect = 4.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 4  CWCYMISALHYLSYKTCLHNFELFKS 81
          CWCY   A+ YLSY++C   +  ++S
Sbjct: 9  CWCYQSCAVEYLSYQSCAVEYWCYQS 34


>UniRef50_Q4P7W1 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 701

 Score = 33.5 bits (73), Expect = 6.2
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -2

Query: 612 ARNEGCVYGFIRSSSPSSQATG*TRTVTGPAYRKV 508
           ARN   +YGF+ SSS  S A+  +R   GP +R+V
Sbjct: 116 ARNIEPIYGFLPSSSGRSSASDPSRYTAGPTFRRV 150


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,169,604
Number of Sequences: 1657284
Number of extensions: 12245200
Number of successful extensions: 26856
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26853
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67908372675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)