Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10403
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77800.1 68414.m09059 PHD finger family protein contains Pfam...    29   4.7  
At5g43770.1 68418.m05353 proline-rich family protein contains pr...    28   6.2  

>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
            domain, PF00628: PHD-finger
          Length = 1423

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 464  QQTPWSGAHSKAKKKGNCCIC 402
            Q  P  G  S AKK  NCC+C
Sbjct: 1104 QINPVQGMESLAKKTDNCCVC 1124


>At5g43770.1 68418.m05353 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 187

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 479 ICHSAQQTPWSGAHSKAKKKGNCCICTALPMRRATNRS 366
           +C S +  PWSG    A K  +   CT+ P+R  TN S
Sbjct: 15  VCSSFKSKPWSGRLITAVKSVS---CTSKPVRGLTNYS 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,410,797
Number of Sequences: 28952
Number of extensions: 271126
Number of successful extensions: 618
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)