Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10402
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    30   0.32 
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      29   0.56 
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   2.3  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   3.0  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    26   6.9  

>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +1

Query: 346 LVLVSHLYTVISRFCVLDQYLSYFFLSVIFNRFVCQIYYA---NFSRFKLILIKSYVTTC 516
           + L +HL T ISRF +LD  L +F +S  F      +Y+     F  FK + +      C
Sbjct: 180 VALDNHLAT-ISRFILLDSMLLFFIISTFFCLSRYHVYHKAPFTFYWFKWLFLTGVCIGC 238

Query: 517 IMV*KSLNFF 546
           +   K +  F
Sbjct: 239 VCSVKLVGLF 248


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 346 LVLVSHLYTVISRFCVLDQYLSYFFLSVIFN-RFVCQIYYANFSRFK 483
           LVL+   Y  ++   V    +++ FLS+IF   F+C I++    RFK
Sbjct: 261 LVLIISAYIALN--AVASVVIAFVFLSLIFFISFICPIWFIKLQRFK 305


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 400 QYLSYFFLSVIFNRFVCQI--YYANFSRFKLILIKSYVTTCIMV*KSLNFFSYKSI 561
           Q+L Y FL +IF   V  +  Y+  FS   L+ +  ++T  I++   + F    SI
Sbjct: 31  QWLLYVFLFIIFANCVVDVKYYFEGFSH-SLLFVYFFLTLIILLVSFMGFHYLNSI 85


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 301 AATLLSVPLRLSYGGLVLVSHLYTVISRFCVLDQYLSYFFLSVIFN 438
           A  LLS     S    +LV H+ TV+ +F + +++L     +++ N
Sbjct: 725 AIILLSATFLYSLIAEILVEHVDTVLDKFAISEKFLGLTLFALVPN 770


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 634 LTYNNLDTITNSAITPASPLLNSIKYSYRRKNSEISKPLYRS 509
           ++Y N+   T + + P S  L  IKYS      E+ + LY+S
Sbjct: 600 MSYFNIVKRTLADMVPKSISLKMIKYSKEHIQHELLEQLYKS 641


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,201,396
Number of Sequences: 5004
Number of extensions: 65441
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)