Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10401
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 163 2e-41
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 163 2e-41
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 110 2e-25
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 59 6e-10
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 29 0.73
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 29 0.97
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 27 2.2
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 2.2
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 27 3.9
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 27 3.9
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 27 3.9
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 5.2
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.2
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 5.2
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 5.2
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 26 6.8
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 26 6.8
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 26 6.8
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 25 9.0
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 25 9.0
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 25 9.0
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 25 9.0
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 163 bits (396), Expect = 2e-41
Identities = 91/171 (53%), Positives = 106/171 (61%), Gaps = 2/171 (1%)
Frame = +2
Query: 254 IKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLL 433
IKDSVVA F WA+KEG M EENLR RFNI DV LH DAIHRGGGQIIPT RR +YA L
Sbjct: 659 IKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTL 718
Query: 434 TAQPRLMEPVYLCEIQCPEVAVGGI-TVC*TDVVVTFSKSPRWQVHLCSL*RPTYLSMSR 610
A P + EPV+L EIQ E A+GGI +V FS+ R L ++ YL ++
Sbjct: 719 LASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNI--KAYLPVNE 776
Query: 611 SV-LLPICVPTPADKAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKG 760
S A +AFPQ VFDHW + GDP +P SKP +V E RKRKG
Sbjct: 777 SFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKG 827
Score = 126 bits (303), Expect = 5e-30
Identities = 56/104 (53%), Positives = 74/104 (71%), Gaps = 5/104 (4%)
Frame = +3
Query: 6 LSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWC 185
LSKSPNKHNR+FM A+PM + L I+ G VNPRDDFK RAR + +++ +DVT+ARKIWC
Sbjct: 576 LSKSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWC 635
Query: 186 FGPEGTGPNILVDCSKGVQYLNELR-----TLLWLDSSGPLRKE 302
FGP+ TG N++VD +K V YLNE++ W GP+ +E
Sbjct: 636 FGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEE 679
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 163 bits (396), Expect = 2e-41
Identities = 91/171 (53%), Positives = 106/171 (61%), Gaps = 2/171 (1%)
Frame = +2
Query: 254 IKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLL 433
IKDSVVA F WA+KEG M EENLR RFNI DV LH DAIHRGGGQIIPT RR +YA L
Sbjct: 659 IKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTL 718
Query: 434 TAQPRLMEPVYLCEIQCPEVAVGGI-TVC*TDVVVTFSKSPRWQVHLCSL*RPTYLSMSR 610
A P + EPV+L EIQ E A+GGI +V FS+ R L ++ YL ++
Sbjct: 719 LASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNI--KAYLPVNE 776
Query: 611 SV-LLPICVPTPADKAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKG 760
S A +AFPQ VFDHW + GDP +P SKP +V E RKRKG
Sbjct: 777 SFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKG 827
Score = 126 bits (303), Expect = 5e-30
Identities = 56/104 (53%), Positives = 74/104 (71%), Gaps = 5/104 (4%)
Frame = +3
Query: 6 LSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWC 185
LSKSPNKHNR+FM A+PM + L I+ G VNPRDDFK RAR + +++ +DVT+ARKIWC
Sbjct: 576 LSKSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWC 635
Query: 186 FGPEGTGPNILVDCSKGVQYLNELR-----TLLWLDSSGPLRKE 302
FGP+ TG N++VD +K V YLNE++ W GP+ +E
Sbjct: 636 FGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEE 679
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 110 bits (265), Expect = 2e-25
Identities = 63/160 (39%), Positives = 85/160 (53%), Gaps = 3/160 (1%)
Frame = +2
Query: 254 IKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLL 433
+K+ + GFQW +EG + +E +R V F + DV L + I+RGGGQIIPT RR Y+ L
Sbjct: 775 VKEYIKQGFQWGTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFL 834
Query: 434 TAQPRLMEPVYLCEIQCPEVAVGGITVC*T---DVVVTFSKSPRWQVHLCSL*RPTYLSM 604
TA PRLMEPVY+ E+ P ++ I T V+ P ++L P S
Sbjct: 835 TASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSC 894
Query: 605 SRSVLLPICVPTPADKAFPQCVFDHWQVLPGDPCEPQSKP 724
L + +A Q VFDHWQV+PGDP + KP
Sbjct: 895 GFETDLRV---HTQGQAMCQMVFDHWQVVPGDPLDKSIKP 931
Score = 69.3 bits (162), Expect = 6e-13
Identities = 29/74 (39%), Positives = 44/74 (59%)
Frame = +3
Query: 3 CLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIW 182
C S +PNK NR+ M +P+ G+ DI+ G+VN K + + + Y++D+ +R IW
Sbjct: 687 CFSDTPNKKNRITMVVEPLEKGISNDIENGKVNINWPQKRISEFFQKNYDWDLLASRSIW 746
Query: 183 CFGPEGTGPNILVD 224
FGP+ G NIL D
Sbjct: 747 AFGPDDRGTNILRD 760
Score = 52.8 bits (121), Expect = 5e-08
Identities = 22/50 (44%), Positives = 35/50 (70%)
Frame = +1
Query: 508 HGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQGL 657
+ +L RRRGHV ++ G+P+++V+A +PV +S GF DLR +T GQ +
Sbjct: 860 YDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAM 909
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 59.3 bits (137), Expect = 6e-10
Identities = 26/54 (48%), Positives = 34/54 (62%)
Frame = +1
Query: 499 GWYHGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQGLP 660
G +GV+++RRG V +E GTP FIVKA +PV ESFGF ++ T G P
Sbjct: 879 GRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYP 932
Score = 33.5 bits (73), Expect = 0.034
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Frame = +2
Query: 242 VPQ*IKDSVVAGFQWAAKEGVMAEENLRGV-----RFNIYDVTLHTDAIHRGG----GQI 394
+P + + VV FQ +G + E ++G+ +F+I D + + + GQ+
Sbjct: 784 IPSDLSEYVVTAFQLITHQGPLCAEPVQGICVSIDQFDISDDSEDSKLLTINNPQIPGQV 843
Query: 395 IPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGI 508
I + + L PRLM +Y C++Q +G +
Sbjct: 844 ISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRV 881
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +3
Query: 108 DDFKTRARYLTEKYEYDVTEARK----IWCFGPEGTGPNILVDCSK 233
+ F R L E+ D+ E + I FGP+ GPNIL D +K
Sbjct: 724 EKFYERLSKLLEEENSDLGELKNHLDSIIAFGPKRVGPNILFDKTK 769
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 29.1 bits (62), Expect = 0.73
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +1
Query: 511 GVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQG 654
G L++R+ + + F ++A +P+N F +++D+R+ T G+G
Sbjct: 695 GNLDKRKATIVDSD--TDEDEFTLQAEVPLNSMFSYSSDIRALTKGKG 740
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 28.7 bits (61), Expect = 0.97
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 514 HRDTTHSYFRTLNFTKIYRLHETGLSS*QTCIQASSS-CWNDLATTSMDGISMECYIIDV 338
H D FR K ++ ET L + ++S CW++L+TTS + + II
Sbjct: 175 HDDNETDSFRINELAK--QIQETSLGATTQEDESSDGICWDELSTTSPESSKVSEPIIQD 232
Query: 337 ESNTTQI 317
+ TT I
Sbjct: 233 NTQTTHI 239
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 405 VVGMIWPPPLWMASVWSVTS*MLNRTPRKFSSAITPSLAA 286
V G+ PPPL + S+ + + + + FS A+ PSL A
Sbjct: 305 VKGVTTPPPLEVISIDHLPTLLPRESSEAFSEALIPSLLA 344
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 165 EARKIWCFGPEGTGPNILVD--CSKGVQYLNELRTLLWLDSSGPLRKELWLKRI 320
E + GP G+G ++LVD S+ Q +NE ++ L+ + +L L+ I
Sbjct: 574 EGNSVIIVGPRGSGKSVLVDDILSRAAQEINEKSYVVRLNGTYQTDDKLALREI 627
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 381 PLWMASVWSVTS*MLNRTPRKFSSAITPSLAAHWNPATTESL 256
P W+A V ++ S + P FSS + +L A+ N + +
Sbjct: 43 PFWLAEVLAINSFVSIHMPAPFSSVVRNALKANPNSVSIRDI 84
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +3
Query: 81 IDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNIL 218
++E + R+ + Y + + VT ++ + FGP GTG +L
Sbjct: 502 LEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLL 547
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 197 LGAKAPNLTGFGNIVFVLFCKIPSAS 120
+G PNL GN +F L ++PS+S
Sbjct: 169 IGILPPNLNSIGNKMFSLKSRVPSSS 194
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 69 LPEDIDEGRVNPRDDFKT 122
LPE IDEG+++ DD KT
Sbjct: 194 LPEKIDEGKLSDVDDGKT 211
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 5.2
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Frame = -3
Query: 481 LNFTKIYRLHETGLSS*QTCIQASSSCWND-----LAT--TSMDGISMECYIIDVESNTT 323
L+++K++ LH +Q S S +ND LA ++ + + Y++ E +
Sbjct: 192 LSYSKVFFLH---------LLQHSDSSFNDKFLLLLANIPVTVSNVEVLLYLLQQEESLA 242
Query: 322 QILFSHNSFLSGPLESSHNRVLNS 251
Q + SFL L S HN+V N+
Sbjct: 243 QFDLNGKSFLYHMLVSLHNQVTNT 266
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = -2
Query: 71 QTIRHGLSLHEQTVVLVGRL*E 6
+++RH +SL+E+T + +GRL E
Sbjct: 324 ESVRHLISLNEETWIQIGRLAE 345
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 6 LSKSPNKHNRLFMKAQPMPDGL 71
++KS KHN+L K +P+P L
Sbjct: 243 INKSVKKHNKLVKKHKPLPSTL 264
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 679 LAGPPWRPVRTSEQALQRCTGNEKEERLR 765
++G +RPV E+ LQ+ N +EER R
Sbjct: 435 VSGKVFRPVEEMEKELQKIRENFEEERRR 463
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 631 RSNTGGQGLPAVRIRPLAGPPWRPVRTSEQALQR 732
RS + G+PA + P+ PP P R S A QR
Sbjct: 1024 RSGSSSSGVPAPNLTPVNVPPTPPPRKS-SASQR 1056
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -2
Query: 224 IDQDVGAGTLGAKAPNLTGFGNIVFVLFCKIPSASLEVIAG 102
+D+D ++G P+LT +G+ VL +P A+ + +G
Sbjct: 317 LDEDSNDNSMGIIKPHLTFYGHEGPVLCVCVPKATHHIFSG 357
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 677 HWQVLPGDPCEPQSKPYNVVQETRKRK 757
H+Q L GDP + PY VQ RK
Sbjct: 78 HFQNLSGDPVSQMATPYPPVQIELMRK 104
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 322 QILFSHNSFLSGPLESSHNRVLNSL 248
Q + H SF+S PLE+ + NSL
Sbjct: 145 QAILKHPSFVSNPLETVREHLGNSL 169
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 9.0
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -3
Query: 289 GPLESSHNRVLNSLRY*TPLEQSTRMLGPVPSGPKHQILRASVTSYSYFS 140
G L SSHN + Y +++ + V G KH +LRA+ +Y YFS
Sbjct: 288 GLLVSSHNHPC-VVEYSEISDEACKATENV-DGHKHLLLRAANIAYHYFS 335
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +1
Query: 616 FTADLRSN---TGGQGLPAVRIRPL 681
F AD+R N GG G+ A+R+RP+
Sbjct: 431 FCADMRINGVNIGGCGVAAIRLRPM 455
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,572,653
Number of Sequences: 5004
Number of extensions: 81890
Number of successful extensions: 236
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -