Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10400
(382 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 91 3e-19
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 90 5e-19
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 38 0.002
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 30 0.71
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 0.94
03_04_0228 - 18989688-18989807,18990300-18990345,18990452-189905... 27 3.8
05_05_0120 + 22520285-22520569 27 5.0
06_01_0209 + 1587656-1587876,1587964-1588055,1590520-1590545,159... 27 6.6
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 27 6.6
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807... 26 8.7
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792... 26 8.7
04_03_0579 + 17481012-17481219,17481776-17481849,17482207-174822... 26 8.7
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 91.1 bits (216), Expect = 3e-19
Identities = 46/91 (50%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Frame = +3
Query: 3 GKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKL 182
GK VV V R+I+ P + V +RPR+RTLT+V+D ILED+V+PAEIVGKRIR +L
Sbjct: 90 GKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILEDVVYPAEIVGKRIRYRL 145
Query: 183 DGSQLIKVHLDKNQQTTIEHKVDT-SSLYTR 272
DG+++IK+ LD ++ E+K++T S++Y R
Sbjct: 146 DGAKVIKIFLDPKERNNTEYKLETFSAVYRR 176
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 90.2 bits (214), Expect = 5e-19
Identities = 46/91 (50%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Frame = +3
Query: 3 GKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKL 182
GK VV V R+I+ P + V RPR+RTLT+V+D ILED+V+PAEIVGKR+R L
Sbjct: 103 GKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKRVRYHL 158
Query: 183 DGSQLIKVHLDKNQQTTIEHKVDT-SSLYTR 272
DG +++K+ LD ++ E+K+DT SS+Y R
Sbjct: 159 DGRKIMKIFLDPKERNNTEYKLDTFSSVYRR 189
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 38.3 bits (85), Expect = 0.002
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3
Query: 3 GKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 161
GK VVF R+I+ +P +K + PR+RTL +V+D ILED+V ++G
Sbjct: 75 GKDVVFDATRRIV-RPLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.9 bits (64), Expect = 0.71
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 138 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 245
+FPA I G + KLD ++L K H D+ + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 0.94
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 87 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 203
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>03_04_0228 -
18989688-18989807,18990300-18990345,18990452-18990552,
18990624-18990702,18990788-18990868,18991440-18991502,
18994171-18994246,18994980-18995246,18995994-18996076,
18996792-18996922,18997043-18997174
Length = 392
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 74 QTKEATLKDIDLCVRCYPRGLG 139
Q ++++LK CVRC+P G G
Sbjct: 184 QKRDSSLKYQTRCVRCFPNGTG 205
>05_05_0120 + 22520285-22520569
Length = 94
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = -2
Query: 150 QQGRPSPRG*HRTQRSMSLSVAS 82
QQ RPSP HR R+MS++VAS
Sbjct: 56 QQARPSPAARHR--RAMSVAVAS 76
>06_01_0209 +
1587656-1587876,1587964-1588055,1590520-1590545,
1591130-1591370,1591459-1591554,1591639-1591754,
1591837-1591917,1592597-1592720,1593222-1593271,
1593735-1593825,1594386-1594421,1594502-1594602,
1594684-1594800
Length = 463
Score = 26.6 bits (56), Expect = 6.6
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 144 PAEIVGKRIRVKLDG-SQLIKVHLDK 218
PA +VG+R+ VKL G +L K +DK
Sbjct: 10 PAAVVGERVAVKLRGYFELAKEEIDK 35
>01_05_0195 -
19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 26.6 bits (56), Expect = 6.6
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = -1
Query: 262 RLEVSTLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIASYTE-VNVLERG 86
+LEVS S V KC ++ EPS L TI + S+ E +N ++
Sbjct: 535 KLEVSMRLSNKVTCHCGKCVVVVAEPSQAYEKDLSTIDEAMIPIDLMQSHDEFINAVKSR 594
Query: 85 LFCLLATRVLWL 50
L L T + +L
Sbjct: 595 LTKLEGTNLAYL 606
>11_02_0078 -
8074247-8074837,8075815-8076341,8076453-8077022,
8077725-8077752
Length = 571
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 88 GLFCLLATRVLWLGLG 41
GL+ +LA R+LWL +G
Sbjct: 517 GLYTVLAPRILWLAIG 532
>11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,
7921808-7922407
Length = 1071
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 88 GLFCLLATRVLWLGLGRILRS 26
GL+ +LA R+LWL +G L S
Sbjct: 1017 GLYTVLAPRLLWLAIGICLLS 1037
>04_03_0579 +
17481012-17481219,17481776-17481849,17482207-17482211,
17482523-17482607,17484144-17484231,17484307-17484398,
17484903-17485055
Length = 234
Score = 26.2 bits (55), Expect = 8.7
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 184 SNLTLMRLPTISAGKTKSSRIASYTEVNVLERGLFCLLATRVLWLGLGRI 35
S LTL P + A + S S+ V L +GL C+++ +V +L L RI
Sbjct: 55 SLLTLCLNPIVFAPQCMESLEISFARV-ALCKGLACVISEQVRYLALVRI 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,384,452
Number of Sequences: 37544
Number of extensions: 171558
Number of successful extensions: 409
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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