Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10400
         (382 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   106   5e-24
AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical ...    27   6.0  
U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical...    26   7.9  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  106 bits (255), Expect = 5e-24
 Identities = 49/92 (53%), Positives = 71/92 (77%), Gaps = 2/92 (2%)
 Frame = +3

Query: 3   GKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVK 179
           G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+DA L++LV+PAE+VG+RIRVK
Sbjct: 88  GRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRRIRVK 147

Query: 180 LDGSQLIKVHLDKNQQTTIEHKVDT-SSLYTR 272
           LDG ++ KVHLDK+ QT + HK+   +S+Y +
Sbjct: 148 LDGKKVYKVHLDKSHQTNVGHKIGVFASVYRK 179



 Score = 38.3 bits (85), Expect = 0.002
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +2

Query: 248 GHLQSVYKKLTGREVTFEFPEP 313
           G   SVY+KLTG++VTFEFP+P
Sbjct: 171 GVFASVYRKLTGKDVTFEFPDP 192


>AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical
           protein T07A9.9a protein.
          Length = 681

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 57  KTRVANKQKRPRSRTLTSVYDAILEDLVFPAE 152
           K ++  K K  RSR+L++V  A  ++L FP E
Sbjct: 599 KPQLGKKMKVGRSRSLSAVRPAPRDELAFPDE 630


>U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical
           protein R57.1b protein.
          Length = 576

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 63  RVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG-KRIRVKLDGS 191
           +V N  KR RSR   ++YD  ++  VFP +  G  +IRV   GS
Sbjct: 471 QVENPSKRERSRGRKTLYDTWMK--VFPDKKAGVPKIRVPGGGS 512


>U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical
           protein R57.1c protein.
          Length = 751

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 63  RVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG-KRIRVKLDGS 191
           +V N  KR RSR   ++YD  ++  VFP +  G  +IRV   GS
Sbjct: 471 QVENPSKRERSRGRKTLYDTWMK--VFPDKKAGVPKIRVPGGGS 512


>U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical
           protein R57.1a protein.
          Length = 770

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 63  RVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG-KRIRVKLDGS 191
           +V N  KR RSR   ++YD  ++  VFP +  G  +IRV   GS
Sbjct: 490 QVENPSKRERSRGRKTLYDTWMK--VFPDKKAGVPKIRVPGGGS 531


>AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical
           protein Y37E3.13 protein.
          Length = 472

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 241 CSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 92
           C   +C F+  C ++SC      ++R      GKT+ +R   Y    VLE
Sbjct: 334 CQFTICTFIGVCCVISC-----CVLRTGGGGRGKTRPNR--EYLHTKVLE 376


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,860,201
Number of Sequences: 27780
Number of extensions: 143761
Number of successful extensions: 384
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)