Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10400
         (382 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.23 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.23 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.6  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   4.9  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   4.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   4.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.23
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +3

Query: 102 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTS 257
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T    V+ S
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQS 84


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.23
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +3

Query: 102 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTS 257
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T    V+ S
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQS 84


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +3

Query: 102 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTS 257
           L S Y+ ++  +V   + +   +++KL  SQLI V+L KNQ  T    V+ S
Sbjct: 32  LLSNYNKLVRPVVNVTDAL--TVKIKLKLSQLIDVNL-KNQIMTTNLWVEQS 80


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 308 RGTRRSLRVPLASCIQTGGV 249
           R T ++LR+PL    + GG+
Sbjct: 240 RPTDKALRLPLQDVYKIGGI 259


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 308 RGTRRSLRVPLASCIQTGGV 249
           R T ++LR+PL    + GG+
Sbjct: 183 RPTDKALRLPLQDVYKIGGI 202


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 308 RGTRRSLRVPLASCIQTGGV 249
           R T ++LR+PL    + GG+
Sbjct: 240 RPTDKALRLPLQDVYKIGGI 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,977
Number of Sequences: 438
Number of extensions: 1541
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)