Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10399
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical pr...   105   2e-23
Z29095-13|CAA82357.1|  810|Caenorhabditis elegans Hypothetical p...    29   1.9  
Z22181-15|CAA80191.1|  810|Caenorhabditis elegans Hypothetical p...    29   1.9  
Z22181-14|CAI46590.1|  516|Caenorhabditis elegans Hypothetical p...    29   1.9  
AF326940-1|AAG49390.1|  810|Caenorhabditis elegans replication l...    29   1.9  
Z81039-5|CAB02770.1|  812|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z78018-3|CAB01444.1|  820|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U88165-8|AAK21391.1|  581|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical
           protein R10E4.4 protein.
          Length = 759

 Score =  105 bits (252), Expect = 2e-23
 Identities = 50/87 (57%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
 Frame = +3

Query: 255 EAHVNEALRLFQVSTLDAAMTGSLAGAEGFTTEEDHEMLTRVEKQLKRRFAVGSQVSEQT 434
           + HV EALRLF+VST++AA TG+LAG EGFT+  D E L R+E Q+K+RFA+G+ VSE  
Sbjct: 658 DKHVEEALRLFRVSTIEAAATGNLAGVEGFTSTADQEALNRIEVQMKKRFAIGTHVSEHL 717

Query: 435 IIQDFL-RQKYPERAILKVIHMMIRRG 512
           I+QDF+ RQ Y E  + KVI  ++RRG
Sbjct: 718 IVQDFVARQHYRESLVKKVIDNLVRRG 744



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
 Frame = +1

Query: 10  GELPLTTLRRYSAYXXXXXXXXXXXXXXXXXXXXYVLMRTGALQHER-QADKRLY---IP 177
           G L +  L+++  Y                    YV MR   +  +  ++ K+ +   IP
Sbjct: 572 GFLTIEFLKKFVTYARLNCGPRLTPQASEKLVNHYVKMRNPVVNADAFKSGKKAHNSAIP 631

Query: 178 ITVRQLEAIVHISESLAKMQLQPFAT 255
           ITVRQLEAIV I+ES+AKM+LQ FAT
Sbjct: 632 ITVRQLEAIVRIAESIAKMELQQFAT 657



 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +2

Query: 509 GELQHRLQRKMLYRL 553
           G+LQ ++QRKMLYR+
Sbjct: 744 GDLQQKMQRKMLYRV 758


>Z29095-13|CAA82357.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK632.1a protein.
          Length = 810

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/19 (63%), Positives = 18/19 (94%)
 Frame = +1

Query: 178 ITVRQLEAIVHISESLAKM 234
           ITVRQLE++V +SE+LA++
Sbjct: 619 ITVRQLESLVRLSEALARL 637


>Z22181-15|CAA80191.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK632.1a protein.
          Length = 810

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/19 (63%), Positives = 18/19 (94%)
 Frame = +1

Query: 178 ITVRQLEAIVHISESLAKM 234
           ITVRQLE++V +SE+LA++
Sbjct: 619 ITVRQLESLVRLSEALARL 637


>Z22181-14|CAI46590.1|  516|Caenorhabditis elegans Hypothetical
           protein ZK632.1b protein.
          Length = 516

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/19 (63%), Positives = 18/19 (94%)
 Frame = +1

Query: 178 ITVRQLEAIVHISESLAKM 234
           ITVRQLE++V +SE+LA++
Sbjct: 325 ITVRQLESLVRLSEALARL 343


>AF326940-1|AAG49390.1|  810|Caenorhabditis elegans replication
           licensing factor MCM2/3/5-type protein protein.
          Length = 810

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/19 (63%), Positives = 18/19 (94%)
 Frame = +1

Query: 178 ITVRQLEAIVHISESLAKM 234
           ITVRQLE++V +SE+LA++
Sbjct: 619 ITVRQLESLVRLSEALARL 637


>Z81039-5|CAB02770.1|  812|Caenorhabditis elegans Hypothetical
           protein C25D7.6 protein.
          Length = 812

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = +1

Query: 151 QADKRLYIPITVRQLEAIVHISESLAKMQL-----QPFATKLT*MKHFVCSK 291
           + D+   +P+T RQLE ++ +S ++AK +      +    K   + HF C K
Sbjct: 601 KTDQERTMPVTARQLETLIRLSTAIAKARFSKKVEREDTEKAYNLLHFACFK 652


>Z78018-3|CAB01444.1|  820|Caenorhabditis elegans Hypothetical
           protein W07G4.3 protein.
          Length = 820

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 333 AEGFTTEEDHEMLTRVEKQLKRRFAVGSQVSEQTIIQDFLRQKY 464
           A G   +  HE+  ++  Q   R AV S++SE  +   +L+ K+
Sbjct: 191 APGKIPQRIHELYKKIGAQSAARLAVFSKISEYRLTGGYLKNKF 234


>U88165-8|AAK21391.1|  581|Caenorhabditis elegans Hypothetical
           protein F54C1.1 protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = +3

Query: 234 AVATVCDEAHVNEALRLFQVSTLDAAMTGSLAGAEGFTTEEDHEMLTRVEKQLKRRFAVG 413
           A +T+  E +++ +   FQ+ +  +     L  A       +     ++E +L+RR  + 
Sbjct: 275 AASTMAPENYISSSNH-FQIPSTVSFSEPVLLSANSTNLTAECTTCHKLESRLRRRSYMF 333

Query: 414 SQVSEQTII---QDFLRQKYP 467
           + V+++T+I   Q  LR KYP
Sbjct: 334 NMVTDRTVIYNRQRELRDKYP 354


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,783,576
Number of Sequences: 27780
Number of extensions: 164386
Number of successful extensions: 441
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)