Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10399
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07690.1 68415.m00993 minichromosome maintenance family prote...    50   1e-06
At5g44635.1 68418.m05469 minichromosome maintenance family prote...    31   0.58 
At5g46280.1 68418.m05697 DNA replication licensing factor, putat...    29   1.8  
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ...    29   2.4  
At3g09660.1 68416.m01145 minichromosome maintenance family prote...    28   5.4  
At5g09910.1 68418.m01146 GTP-binding protein-related contains we...    27   9.5  

>At2g07690.1 68415.m00993 minichromosome maintenance family protein
           / MCM family protein similar to SP|P55862 DNA
           replication licensing factor MCM5 (CDC46 homolog)
           {Xenopus laevis}; contains Pfam profile PF00493:
           MCM2/3/5 family
          Length = 727

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 27/83 (32%), Positives = 50/83 (60%)
 Frame = +3

Query: 264 VNEALRLFQVSTLDAAMTGSLAGAEGFTTEEDHEMLTRVEKQLKRRFAVGSQVSEQTIIQ 443
           V++A +LF  ST+DAA +G +      T E  +E + + E Q+KRR  +G+++SE+ +I+
Sbjct: 632 VDKAFKLFDTSTMDAARSG-INQQINITGEMANE-IKQAETQIKRRMGIGARLSERRLIE 689

Query: 444 DFLRQKYPERAILKVIHMMIRRG 512
           D  R    +  + + + +M +RG
Sbjct: 690 DLARMGMNDSMVRRALLIMHQRG 712



 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 29/75 (38%), Positives = 36/75 (48%)
 Frame = +1

Query: 31  LRRYSAYXXXXXXXXXXXXXXXXXXXXYVLMRTGALQHERQADKRLYIPITVRQLEAIVH 210
           L+RY  Y                    YV +R    +   +  +   IPITVRQLEAIV 
Sbjct: 554 LKRYIQYCRARCHPRLSKDAAENLQRKYVTIRMDMKRRAHETGEAAPIPITVRQLEAIVR 613

Query: 211 ISESLAKMQLQPFAT 255
           +SESLAKM+L   AT
Sbjct: 614 LSESLAKMRLSHEAT 628


>At5g44635.1 68418.m05469 minichromosome maintenance family protein
           / MCM family protein similar to SP|P97311 DNA
           replication licensing factor MCM6 {Mus musculus};
           contains Pfam profile PF00493: MCM2/3/5 family
          Length = 831

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 23/81 (28%), Positives = 36/81 (44%)
 Frame = +1

Query: 1   AAAGELPLTTLRRYSAYXXXXXXXXXXXXXXXXXXXXYVLMRTGALQHERQADKRLYIPI 180
           A + E     L+RY AY                    YV +R G    +     R+   +
Sbjct: 561 ALSPEFTTVQLKRYIAYAKTLKPKLSPEARKLLVES-YVALRRG----DTTPGTRVAYRM 615

Query: 181 TVRQLEAIVHISESLAKMQLQ 243
           TVRQLEA++ +SE++A+  L+
Sbjct: 616 TVRQLEALIRLSEAIARSHLE 636


>At5g46280.1 68418.m05697 DNA replication licensing factor, putative
           similar to SP|Q43704 DNA replication licensing factor
           MCM3 homolog (Replication origin activator) (ROA
           protein) {Zea mays}; contains Pfam profile PF00493:
           MCM2/3/5 family
          Length = 776

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 172 IPITVRQLEAIVHISESLAKMQLQPFATK 258
           +PIT R LE I+ ++ + AKM+L    TK
Sbjct: 592 LPITARTLETIIRLATAHAKMKLSSEVTK 620


>At5g48320.1 68418.m05969 DC1 domain-containing protein contains Pfam
            profile PF03107: DC1 domain
          Length = 977

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -2

Query: 488  YFKNGSFWIFLSQEVLNDCLFRNLRAHSEPAL*LFLDASQHFVIFFCCKTFSSCQTS 318
            Y K+GSFW++ S +V    +  N    S P          H ++F C     SC TS
Sbjct: 913  YMKSGSFWLYCSSKV---SVLPNNHHMSRPICSFCKKRCPHNIVFQCLGLI-SCSTS 965


>At3g09660.1 68416.m01145 minichromosome maintenance family protein
           / MCM family protein similar to SP|P49717 DNA
           replication licensing factor MCM4 (CDC21 homolog) {Mus
           musculus}; contains Pfam profile PF00493: MCM2/3/5
           family
          Length = 777

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 142 HERQADKRLYIPITVRQLEAIVHISESLAKMQLQ 243
           H   AD     PIT RQLE++V ++++ A++ L+
Sbjct: 628 HNTSADST---PITARQLESLVRLAQARARVDLR 658


>At5g09910.1 68418.m01146 GTP-binding protein-related contains weak
           similarity to GTP-binding protein yptV3.
           (Swiss-Prot:P36862) [Volvox carteri]
          Length = 431

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 459 KYPERAILKVIHMMIRRGSFS 521
           +Y + A+ K+ HM+IRR  FS
Sbjct: 204 RYDKEALTKIFHMLIRRRYFS 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,114,435
Number of Sequences: 28952
Number of extensions: 145889
Number of successful extensions: 397
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)