Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10398
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   0.99 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    24   0.99 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    24   1.3  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   6.9  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = -2

Query: 249 PGAEFGTSPGTRPRTRPAVRSHPRSQTPR 163
           PG   G      PR RP    H R   P+
Sbjct: 302 PGQNPGEKTNIAPRERPRATDHQRRNEPK 330


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 240 EFGTSPGTRPRTRPAVRSHPRSQTP 166
           +F T P T+P  +P V + P    P
Sbjct: 176 KFTTKPSTKPTNKPVVVTKPPQAPP 200


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 614 YLSNVTIQYKKNIGKS 567
           +  N  I+YKKNIGK+
Sbjct: 280 WFGNKRIRYKKNIGKA 295


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 55  SMTSGPPPP 29
           S+TS PPPP
Sbjct: 325 SLTSSPPPP 333


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,150
Number of Sequences: 336
Number of extensions: 3089
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)